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Professor Sergio Danilo Junho Pena

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Kunrath-Lima M, Repolês BM, Alves CL, Furtado C, Rajão MA, Macedo AM, Franco GR, Pena SDJ, Valenzuela L, Wisnovsky S, Kelley SO, Galanti N, Cabrera G, Machado CR. Characterization of Trypanosoma cruzi MutY DNA glycosylase ortholog and its role in oxidative stress response. Infect Genet Evol. 2017 Nov; 55:332-342. PMID: 28970112.
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    2. Linhares ND, Freire MCM, Cardenas RGCCL, Pena HB, Bahia M, Pena SDJ. "Exome sequencing identifies a novel homozygous variant in NDRG4 in a family with infantile myofibromatosis (Linhares et al., 2014)" turns out to be EBV+ leiomyomatosis caused by CARMIL2 mutations. Eur J Med Genet. 2018 02; 61(2):106. PMID: 28223207.
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    3. Santos VR, Pena HB, Pena SD. A multiplex panel of short-amplicon insertion-deletion DNA polymorphisms for forensic analysis. Genet Mol Res. 2015 Apr 10; 14(2):2947-52. PMID: 25966056.
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    4. Pena SD, Coimbra RL. Ataxia and myoclonic epilepsy due to a heterozygous new mutation in KCNA2: proposal for a new channelopathy. Clin Genet. 2015 Feb; 87(2):e1-3. PMID: 25477152.
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    5. Groenner-Penna M, Croce EF, Pimenta CG, Bicalho HM, Pena SD. MULTINDELS-BOV: Zebu traceback method based on DNA insertion-deletion polymorphisms. Genet Mol Res. 2014 Nov 07; 13(4):9171-86. PMID: 25501139.
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    6. Malaspinas AS, Lao O, Schroeder H, Rasmussen M, Raghavan M, Moltke I, Campos PF, Sagredo FS, Rasmussen S, Gonçalves VF, Albrechtsen A, Allentoft ME, Johnson PL, Li M, Reis S, Bernardo DV, DeGiorgio M, Duggan AT, Bastos M, Wang Y, Stenderup J, Moreno-Mayar JV, Brunak S, Sicheritz-Ponten T, Hodges E, Hannon GJ, Orlando L, Price TD, Jensen JD, Nielsen R, Heinemeier J, Olsen J, Rodrigues-Carvalho C, Lahr MM, Neves WA, Kayser M, Higham T, Stoneking M, Pena SD, Willerslev E. Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Curr Biol. 2014 Nov 03; 24(21):R1035-7. PMID: 25455029.
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    7. Friedrich DC, Genro JP, Sortica VA, Suarez-Kurtz G, de Moraes ME, Pena SD, dos Santos AK, Romano-Silva MA, Hutz MH. Distribution of CYP2D6 alleles and phenotypes in the Brazilian population. PLoS One. 2014; 9(10):e110691. PMID: 25329392.
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    8. Linhares ND, Freire MC, Cardenas RG, Pena HB, Bahia M, Pena SD. Exome sequencing identifies a novel homozygous variant in NDRG4 in a family with infantile myofibromatosis. Eur J Med Genet. 2014 Nov-Dec; 57(11-12):643-8. PMID: 25241110.
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    9. Linhares ND, Freire MC, Cardenas RG, Bahia M, Puzenat E, Aubin F, Pena SD. Modulation of expressivity in PDGFRB-related infantile myofibromatosis: a role for PTPRG? Genet Mol Res. 2014 Aug 15; 13(3):6287-92. PMID: 25158255.
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    10. Liboredo R, Pena SD. Pharmacogenomics: accessing important alleles by imputation from commercial genome-wide SNP arrays. Genet Mol Res. 2014 Jul 25; 13(3):5713-21. PMID: 25117329.
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    11. Sandoval JR, Salazar-Granara A, Acosta O, Castillo-Herrera W, Fujita R, Pena SD, Santos FR. Tracing the genomic ancestry of Peruvians reveals a major legacy of pre-Columbian ancestors. J Hum Genet. 2013 Sep; 58(9):627-34. PMID: 23863748.
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    12. Gonçalves VF, Stenderup J, Rodrigues-Carvalho C, Silva HP, Gonçalves-Dornelas H, Líryo A, Kivisild T, Malaspinas AS, Campos PF, Rasmussen M, Willerslev E, Pena SD. Identification of Polynesian mtDNA haplogroups in remains of Botocudo Amerindians from Brazil. Proc Natl Acad Sci U S A. 2013 Apr 16; 110(16):6465-9. PMID: 23576724.
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    13. Suarez-Kurtz G, Pena SD, Struchiner CJ, Hutz MH. Pharmacogenomic Diversity among Brazilians: Influence of Ancestry, Self-Reported Color, and Geographical Origin. Front Pharmacol. 2012; 3:191. PMID: 23133420.
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    14. Suarez-Kurtz G, Pena SD, Hutz MH. Application of the F(ST) statistics to explore pharmacogenomic diversity in the Brazilian population. Pharmacogenomics. 2012 May; 13(7):771-7. PMID: 22594509.
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    15. Schamber-Reis BL, Nardelli S, Régis-Silva CG, Campos PC, Cerqueira PG, Lima SA, Franco GR, Macedo AM, Pena SD, Cazaux C, Hoffmann JS, Motta MC, Schenkman S, Teixeira SM, Machado CR. DNA polymerase beta from Trypanosoma cruzi is involved in kinetoplast DNA replication and repair of oxidative lesions. Mol Biochem Parasitol. 2012 Jun; 183(2):122-31. PMID: 22369885.
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    16. Pena SD, Di Pietro G, Fuchshuber-Moraes M, Genro JP, Hutz MH, Kehdy Fde S, Kohlrausch F, Magno LA, Montenegro RC, Moraes MO, de Moraes ME, de Moraes MR, Ojopi EB, Perini JA, Racciopi C, Ribeiro-Dos-Santos AK, Rios-Santos F, Romano-Silva MA, Sortica VA, Suarez-Kurtz G. The genomic ancestry of individuals from different geographical regions of Brazil is more uniform than expected. PLoS One. 2011 Feb 16; 6(2):e17063. PMID: 21359226.
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    17. Gonçalves VF, Parra FC, Gonçalves-Dornelas H, Rodrigues-Carvalho C, Silva HP, Pena SD. Recovering mitochondrial DNA lineages of extinct Amerindian nations in extant homopatric Brazilian populations. Investig Genet. 2010 Dec 01; 1(1):13. PMID: 21122100.
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    18. Andrade LO, Galvão LM, Meirelles Mde N, Chiari E, Pena SD, Macedo AM. Differential tissue tropism of Trypanosoma cruzi strains: an in vitro study. Mem Inst Oswaldo Cruz. 2010 Sep; 105(6):834-7. PMID: 20945002.
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    19. Pimenta JR, Pena SD. Efficient human paternity testing with a panel of 40 short insertion-deletion polymorphisms. Genet Mol Res. 2010 Mar 30; 9(1):601-7. PMID: 20391344.
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    20. Pena SD, Bastos-Rodrigues L, Pimenta JR, Bydlowski SP. DNA tests probe the genomic ancestry of Brazilians. Braz J Med Biol Res. 2009 Oct; 42(10):870-6. PMID: 19738982.
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    21. Pena SD, Machado CR, Macedo AM. Trypanosoma cruzi: ancestral genomes and population structure. Mem Inst Oswaldo Cruz. 2009 Jul; 104 Suppl 1:108-14. PMID: 19753465.
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    22. Freitas JM, Andrade LO, Pires SF, Lima R, Chiari E, Santos RR, Soares M, Machado CR, Franco GR, Pena SD, Macedo AM. The MHC gene region of murine hosts influences the differential tissue tropism of infecting Trypanosoma cruzi strains. PLoS One. 2009; 4(4):e5113. PMID: 19337367.
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    23. Lopes DO, Falconi FC, Goes AM, Canitrot Y, Hoffmann JS, Cazaux C, Franco GR, Macedo AM, Pena SD, Machado CR. Isolation and characterization of HC1: a novel human DNA repair gene. Genet Mol Res. 2009; 8(1):247-60. PMID: 19291873.
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    24. Rajão MA, Passos-Silva DG, DaRocha WD, Franco GR, Macedo AM, Pena SD, Teixeira SM, Machado CR. DNA polymerase kappa from Trypanosoma cruzi localizes to the mitochondria, bypasses 8-oxoguanine lesions and performs DNA synthesis in a recombination intermediate. Mol Microbiol. 2009 Jan; 71(1):185-97. PMID: 19007414.
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    25. Suarez-Kurtz G, Perini JA, Bastos-Rodrigues L, Pena SD, Struchiner C. Impact of population admixture on the distribution of the CYP3A5*3 polymorphism. Pharmacogenomics. 2007 Oct; 8(10):1299-306. PMID: 17979504.
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    26. Pires SF, DaRocha WD, Freitas JM, Oliveira LA, Kitten GT, Machado CR, Pena SD, Chiari E, Macedo AM, Teixeira SM. Cell culture and animal infection with distinct Trypanosoma cruzi strains expressing red and green fluorescent proteins. Int J Parasitol. 2008 Mar; 38(3-4):289-97. PMID: 17967460.
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    27. Suarez-Kurtz G, Vargens DD, Struchiner CJ, Bastos-Rodrigues L, Pena SD. Self-reported skin color, genomic ancestry and the distribution of GST polymorphisms. Pharmacogenet Genomics. 2007 Sep; 17(9):765-71. PMID: 17700365.
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    28. Marrero AR, Bravi C, Stuart S, Long JC, Pereira das Neves Leite F, Kommers T, Carvalho CM, Pena SD, Ruiz-Linares A, Salzano FM, Cátira Bortolini M. Pre- and post-Columbian gene and cultural continuity: the case of the Gaucho from southern Brazil. Hum Hered. 2007; 64(3):160-71. PMID: 17536210.
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    29. Gonçalves VF, Prosdocimi F, Santos LS, Ortega JM, Pena SD. Sex-biased gene flow in African Americans but not in American Caucasians. Genet Mol Res. 2007 May 09; 6(2):256-61. PMID: 17573655.
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    30. Lopes DO, Regis-da-Silva CG, Machado-Silva A, Macedo AM, Franco GR, Hoffmann JS, Cazaux C, Pena SD, Teixeira SM, Machado CR. Analysis of DNA polymerase activity in vitro using non-radioactive primer extension assay in an automated DNA sequencer. Genet Mol Res. 2007 May 07; 6(2):250-5. PMID: 17573654.
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    31. Suarez-Kurtz G, Pena SD. Pharmacogenomics in the Americas: the impact of genetic admixture. Curr Drug Targets. 2006 Dec; 7(12):1649-58. PMID: 17168840.
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    32. Lemée F, Bavoux C, Pillaire MJ, Bieth A, Machado CR, Pena SD, Guimbaud R, Selves J, Hoffmann JS, Cazaux C. Characterization of promoter regulatory elements involved in downexpression of the DNA polymerase kappa in colorectal cancer. Oncogene. 2007 May 17; 26(23):3387-94. PMID: 17099721.
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    33. Bastos-Rodrigues L, Pimenta JR, Pena SD. The genetic structure of human populations studied through short insertion-deletion polymorphisms. Ann Hum Genet. 2006 Sep; 70(Pt 5):658-65. PMID: 16907710.
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    34. Bicalho HM, Pimenta CG, Mendes IK, Pena HB, Queiroz EM, Pena SD. Determination of ancestral proportions in synthetic bovine breeds using commonly employed microsatellite markers. Genet Mol Res. 2006 Jul 31; 5(3):432-7. PMID: 17117357.
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    35. Suarez-Kurtz G, Vianna-Jorge R, Perini JA, Pena SD. Detection of CYP2C9*5 in a white Brazilian subject. Clin Pharmacol Ther. 2005 Jun; 77(6):587-8. PMID: 15961990.
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    36. Freitas JM, Lages-Silva E, Crema E, Pena SD, Macedo AM. Real time PCR strategy for the identification of major lineages of Trypanosoma cruzi directly in chronically infected human tissues. Int J Parasitol. 2005 Apr 01; 35(4):411-7. PMID: 15777917.
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    37. Calzavara-Silva CE, Prosdocimi F, Abath FG, Pena SD, Franco GR. Nucleic acid binding properties of SmZF1, a zinc finger protein of Schistosoma mansoni. Int J Parasitol. 2004 Oct; 34(11):1211-9. PMID: 15491583.
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    38. Macedo AM, Machado CR, Oliveira RP, Pena SD. Trypanosoma cruzi: genetic structure of populations and relevance of genetic variability to the pathogenesis of chagas disease. Mem Inst Oswaldo Cruz. 2004 Feb; 99(1):1-12. PMID: 15057339.
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    39. Valadão AF, Fantappie MR, LoVerde PT, Pena SD, Rumjanek FD, Franco GR. Y-box binding protein from Schistosoma mansoni: interaction with DNA and RNA. Mol Biochem Parasitol. 2002 Nov-Dec; 125(1-2):47-57. PMID: 12467973.
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    40. Macedo AM, Oliveira RP, Pena SD. Chagas disease: role of parasite genetic variation in pathogenesis. Expert Rev Mol Med. 2002 Mar 05; 4(5):1-16. PMID: 14987389.
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    41. Lages-Silva E, Crema E, Ramirez LE, Macedo AM, Pena SD, Chiari E. Relationship between Trypanosoma cruzi and human chagasic megaesophagus: blood and tissue parasitism. Am J Trop Med Hyg. 2001 Nov; 65(5):435-41. PMID: 11716095.
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    42. Augusto-Pinto L, Bartholomeu DC, Teixeira SM, Pena SD, Machado CR. Molecular cloning and characterization of the DNA mismatch repair gene class 2 from the Trypanosoma cruzi. Gene. 2001 Jul 11; 272(1-2):323-33. PMID: 11470539.
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    43. Tarazona-Santos E, Carvalho-Silva DR, Pettener D, Luiselli D, De Stefano GF, Labarga CM, Rickards O, Tyler-Smith C, Pena SD, Santos FR. Genetic differentiation in South Amerindians is related to environmental and cultural diversity: evidence from the Y chromosome. Am J Hum Genet. 2001 Jun; 68(6):1485-96. PMID: 11353402.
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    44. Macedo AM, Pimenta JR, Aguiar RS, Melo AI, Chiari E, Zingales B, Pena SD, Oliveira RP. Usefulness of microsatellite typing in population genetic studies of Trypanosoma cruzi. Mem Inst Oswaldo Cruz. 2001 Apr; 96(3):407-13. PMID: 11313654.
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    45. Simpson AJ, Caballero OL, Pena SD. Microsatellite instability as a tool for the classification of gastric cancer. Trends Mol Med. 2001 Feb; 7(2):76-80. PMID: 11286759.
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    46. Alves-Silva J, da Silva Santos M, Guimarães PE, Ferreira AC, Bandelt HJ, Pena SD, Prado VF. The ancestry of Brazilian mtDNA lineages. Am J Hum Genet. 2000 Aug; 67(2):444-61. PMID: 10873790.
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    47. Vago AR, Andrade LO, Leite AA, d'Avila Reis D, Macedo AM, Adad SJ, Tostes S, Moreira MC, Filho GB, Pena SD. Genetic characterization of Trypanosoma cruzi directly from tissues of patients with chronic Chagas disease: differential distribution of genetic types into diverse organs. Am J Pathol. 2000 May; 156(5):1805-9. PMID: 10793092.
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    48. Sturzeneker R, Bevilacqua RA, Haddad LA, Simpson AJ, Pena SD. Microsatellite instability in tumors as a model to study the process of microsatellite mutations. Hum Mol Genet. 2000 Feb 12; 9(3):347-52. PMID: 10655543.
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    49. Rabelo EM, Coelho PM, Pena SD. Identification of stage-specific genes in Schistosoma mansoni. Ann N Y Acad Sci. 2000; 916:654-7. PMID: 11193693.
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    50. Santos TM, Johnston DA, Azevedo V, Ridgers IL, Martinez MF, Marotta GB, Santos RL, Fonseca SJ, Ortega JM, Rabelo EM, Saber M, Ahmed HM, Romeih MH, Franco GR, Rollinson D, Pena SD. Analysis of the gene expression profile of Schistosoma mansoni cercariae using the expressed sequence tag approach. Mol Biochem Parasitol. 1999 Sep 20; 103(1):79-97. PMID: 10514083.
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    51. Carvalho-Silva DR, Santos FR, Hutz MH, Salzano FM, Pena SD. Divergent human Y-chromosome microsatellite evolution rates. J Mol Evol. 1999 Aug; 49(2):204-14. PMID: 10441672.
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    52. Haddad LA, Aguiar MJ, Costa SS, Mingroni-Netto RC, Vianna-Morgante AM, Pena SD. Fully mutated and gray-zone FRAXA alleles in Brazilian mentally retarded boys. Am J Med Genet. 1999 May 28; 84(3):198-201. PMID: 10331590.
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    53. Andrade LO, Machado CR, Chiari E, Pena SD, Macedo AM. Differential tissue distribution of diverse clones of Trypanosoma cruzi in infected mice. Mol Biochem Parasitol. 1999 May 25; 100(2):163-72. PMID: 10391378.
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    54. Santos FR, Pandya A, Tyler-Smith C, Pena SD, Schanfield M, Leonard WR, Osipova L, Crawford MH, Mitchell RJ. The central Siberian origin for native American Y chromosomes. Am J Hum Genet. 1999 Feb; 64(2):619-28. PMID: 9973301.
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    55. Gomes ML, Galvao LM, Macedo AM, Pena SD, Chiari E. Chagas' disease diagnosis: comparative analysis of parasitologic, molecular, and serologic methods. Am J Trop Med Hyg. 1999 Feb; 60(2):205-10. PMID: 10072137.
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    56. Oliveira RP, Melo AI, Macedo AM, Chiari E, Pena SD. The population structure of Trypanosoma cruzi: expanded analysis of 54 strains using eight polymorphic CA-repeat microsatellites. Mem Inst Oswaldo Cruz. 1999; 94 Suppl 1:65-70. PMID: 10677692.
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    57. Zouain CS, Azevedo VA, Franco GR, Pena SD, Goes AM. Identification of genes encoding Schistosoma mansoni antigens using an antigenic sequence tag strategy. J Parasitol. 1998 Dec; 84(6):1307-10. PMID: 9920341.
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    58. Haddad LA, Parra FC, Pena SD. Characterization and mapping of four novel human expressed polymorphic trinucleotide microsatellites. Gene. 1998 Nov 26; 223(1-2):369-74. PMID: 9858768.
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    59. van Doorn LJ, Figueiredo C, Sanna R, Pena S, Midolo P, Ng EK, Atherton JC, Blaser MJ, Quint WG. Expanding allelic diversity of Helicobacter pylori vacA. J Clin Microbiol. 1998 Sep; 36(9):2597-603. PMID: 9705399.
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    60. Franco GR, Tanaka M, Simpson AJ, Pena SD. Characterization of a Schistosoma mansoni homologue of the gene encoding the breast basic conserved protein 1/L13 ribosomal protein. Comp Biochem Physiol B Biochem Mol Biol. 1998 Aug; 120(4):701-8. PMID: 9854818.
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    61. Gomes ML, Macedo AM, Pena SD, Chiari E. Genetic relationships between Trypanosoma cruzi strains isolated from chronic chagasic patients in southern Brazil as revealed by RAPD and SSR-PCR analysis. Acta Trop. 1998 May; 69(2):99-109. PMID: 9588230.
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    62. Oliveira RP, Broude NE, Macedo AM, Cantor CR, Smith CL, Pena SD. Probing the genetic population structure of Trypanosoma cruzi with polymorphic microsatellites. Proc Natl Acad Sci U S A. 1998 Mar 31; 95(7):3776-80. PMID: 9520443.
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    63. Macedo AM, Pena SD. Genetic Variability of Trypanosoma cruzi:Implications for the Pathogenesis of Chagas Disease. Parasitol Today. 1998 Mar; 14(3):119-24. PMID: 17040719.
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    64. Sturzeneker R, Haddad LA, Bevilacqua RA, Simpson AJ, Pena SD. Polarity of mutations in tumor-associated microsatellite instability. Hum Genet. 1998 Feb; 102(2):231-5. PMID: 9521596.
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    65. Meira WS, Franco GR, Rabelo EM, Pena SD. Characterization of an abundant Schistosoma mansoni transcript with no homologs in the databases. Mem Inst Oswaldo Cruz. 1998; 93 Suppl 1:211-3. PMID: 9921353.
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    66. Guerra-Sá R, Franco GR, Pena SD, Rodrigues V. Lactate dehydrogenase: sequence and analysis of its expression during the life cycle of Schistosoma mansoni. Mem Inst Oswaldo Cruz. 1998; 93 Suppl 1:205-6. PMID: 9921351.
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    67. Rabelo EM, Hobaika AB, Coelho PM, Pena SD. Sequencing and expression analysis of a Schistosoma mansoni gene homologue to a Drosophila gene involved in germ plasm assembly. Mem Inst Oswaldo Cruz. 1998; 93 Suppl 1:207-9. PMID: 9921352.
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    68. Gomes ML, Macedo AM, Vago AR, Pena SD, Galvão LM, Chiari E. Trypanosoma cruzi: optimization of polymerase chain reaction for detection in human blood. Exp Parasitol. 1998 Jan; 88(1):28-33. PMID: 9571142.
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    69. Franco GR, Garratt RC, Tanaka M, Simpson AJ, Pena SD. Characterization of a Schistosoma mansoni gene encoding a homologue of the Y-box binding protein. Gene. 1997 Oct 01; 198(1-2):5-16. PMID: 9370259.
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    70. Rabelo EM, Franco GR, Azevedo VA, Pena HB, Santos TM, Meira WS, Rodrigues NA, Ortega JM, Pena SD. Update of the gene discovery program in Schistosoma mansoni with the expressed sequence tag approach. Mem Inst Oswaldo Cruz. 1997 Sep-Oct; 92(5):625-9. PMID: 9566229.
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    71. Hirsch C, Carvalho-Queiroz C, Franco GR, Pena SD, Simpson AJ, Goes AM. Evidentiation of paramyosin (Sm-97) as a modulating antigen on granulomatous hypersensitivity to Schistosoma mansoni eggs. Mem Inst Oswaldo Cruz. 1997 Sep-Oct; 92(5):663-7. PMID: 9566237.
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    72. Fuzikawa AK, Haddad LA, da-Cunha-Melo JR, Brasileiro-Filho G, Pena SD. Utilization of microsatellites for the analysis of genomic alterations in colorectal cancers in Brazil. Braz J Med Biol Res. 1997 Aug; 30(8):915-21. PMID: 9361718.
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    73. Dias Neto E, Caballero OL, Vidigal TH, Pena SD, Simpson AJ. Partially degraded DNA of parasitological interest serves as an adequate template for the production of random amplified polymorphic DNAs (RAPDs). J Parasitol. 1997 Aug; 83(4):753-5. PMID: 9267422.
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    74. Franco GR, Rabelo EM, Azevedo V, Pena HB, Ortega JM, Santos TM, Meira WS, Rodrigues NA, Dias CM, Harrop R, Wilson A, Saber M, Abdel-Hamid H, Faria MS, Margutti ME, Parra JC, Pena SD. Evaluation of cDNA libraries from different developmental stages of Schistosoma mansoni for production of expressed sequence tags (ESTs). DNA Res. 1997 Jun 30; 4(3):231-40. PMID: 9330911.
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    75. Jannotti-Passos LK, Vidigal TH, Dias-Neto E, Pena SD, Simpson AJ, Dutra WO, Souza CP, Carvalho-Parra JF. PCR amplification of the mitochondrial DNA minisatellite region to detect Schistosoma mansoni infection in Biomphalaria glabrata snails. J Parasitol. 1997 Jun; 83(3):395-9. PMID: 9194818.
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    76. Haddad LA, Fuzikawa AK, Pena SD. Simultaneous detection of size and sequence polymorphisms in the transcribed trinucleotide repeat D2S196E (EST00493). Hum Genet. 1997 Jun; 99(6):796-800. PMID: 9187676.
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    77. Oliveira RP, Macedo AM, Chiari E, Pena SD. An alternative approach to evaluating the intraspecific genetic variability of parasites. Parasitol Today. 1997 May; 13(5):196-200. PMID: 15275092.
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    78. Dias Neto E, Harrop R, Correa-Oliveira R, Wilson RA, Pena SD, Simpson AJ. Minilibraries constructed from cDNA generated by arbitrarily primed RT-PCR: an alternative to normalized libraries for the generation of ESTs from nanogram quantities of mRNA. Gene. 1997 Feb 20; 186(1):135-42. PMID: 9047356.
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    79. Haddad LA, Pena SD. EST00444 (D13S308E) maps to 13q12.1. Cytogenet Cell Genet. 1997; 78(1):20. PMID: 9345898.
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    80. Vago AR, Macedo AM, Oliveira RP, Andrade LO, Chiari E, Galvão LM, Reis D, Pereira ME, Simpson AJ, Tostes S, Pena SD. Kinetoplast DNA signatures of Trypanosoma cruzi strains obtained directly from infected tissues. Am J Pathol. 1996 Dec; 149(6):2153-9. PMID: 8952547.
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    81. Dias Neto E, Harrop R, Corrêa-Oliveira R, Pena SD, Wilson RA, Simpson AJ. The schistosome genome project: RNA arbitrarily primed PCR allows the accelerated generation of expressed sequence tags. Mem Inst Oswaldo Cruz. 1996 Sep-Oct; 91(5):655-7. PMID: 9137752.
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    82. Santos FR, Bianchi NO, Pena SD. Worldwide distribution of human Y-chromosome haplotypes. Genome Res. 1996 Jul; 6(7):601-11. PMID: 8796347.
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    83. Carakushansky G, Aguiar MB, Gonçalves MR, Berthier CO, Kahn E, Carakushansky M, Pena SD. Identical twin discordance for the Brachmann-de Lange syndrome revisited. Am J Med Genet. 1996 Jun 14; 63(3):458-60. PMID: 8737652.
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    84. Haddad LA, Mingroni-Netto RC, Vianna-Morgante AM, Pena SD. A PCR-based test suitable for screening for fragile X syndrome among mentally retarded males. Hum Genet. 1996 Jun; 97(6):808-12. PMID: 8641701.
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    85. Pena SD. Third World participation in genome projects. Trends Biotechnol. 1996 Mar; 14(3):74-7. PMID: 8867290.
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    86. Barreto G, Vago AR, Ginther C, Simpson AJ, Pena SD. Mitochondrial D-loop "signatures" produced by low-stringency single specific primer PCR constitute a simple comparative human identity test. Am J Hum Genet. 1996 Mar; 58(3):609-16. PMID: 8644720.
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    87. Santos FR, Gerelsaikhan T, Munkhtuja B, Oyunsuren T, Epplen JT, Pena SD. Geographic differences in the allele frequencies of the human Y-linked tetranucleotide polymorphism DYS19. Hum Genet. 1996 Mar; 97(3):309-13. PMID: 8786070.
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    88. Santos FR, Pena SD, Tyler-Smith C. PCR haplotypes for the human Y chromosome based on alphoid satellite DNA variants and heteroduplex analysis. Gene. 1995 Nov 20; 165(2):191-8. PMID: 8522174.
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    89. Pena SD, Prado VF, Epplen JT. DNA diagnosis of human genetic individuality. J Mol Med (Berl). 1995 Nov; 73(11):555-64. PMID: 8751139.
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    90. Gomes RF, Macedo AM, Pena SD, Melo MN. Leishmania (Viannia) braziliensis: genetic relationships between strains isolated from different areas of Brazil as revealed by DNA fingerprinting and RAPD. Exp Parasitol. 1995 Jun; 80(4):681-7. PMID: 7758549.
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    91. Alves MS, Martins MS, Pena SD. Monoclonal antibody against a 52 K sperm surface protein inhibits sperm-zona pellucida interactions in the rat. J Exp Zool. 1995 Jun 01; 272(2):123-33. PMID: 7622994.
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    92. Franco GR, Simpson AJ, Pena SD. Sequencing and identification of expressed Schistosoma mansoni genes by random selection of cDNA clones from a directional library. Mem Inst Oswaldo Cruz. 1995 Mar-Apr; 90(2):215-6. PMID: 8531660.
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    93. Simpson AJ, Dias Neto E, Vidigal TH, Pena HB, Carvalho OS, Pena SD. DNA polymorphism of schistosomes and their snail hosts. Mem Inst Oswaldo Cruz. 1995 Mar-Apr; 90(2):211-3. PMID: 8531659.
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    94. Villa LL, Caballero OL, Levi JE, Pena SD, Simpson AJ. An approach to human papillomavirus identification using low stringency single specific primer PCR. Mol Cell Probes. 1995 Feb; 9(1):45-8. PMID: 7760859.
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    95. Pena HB, de Souza CP, Simpson AJ, Pena SD. Intracellular promiscuity in Schistosoma mansoni: nuclear transcribed DNA sequences are part of a mitochondrial minisatellite region. Proc Natl Acad Sci U S A. 1995 Jan 31; 92(3):915-9. PMID: 7846078.
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    96. Franco GR, Adams MD, Soares MB, Simpson AJ, Venter JC, Pena SD. Identification of new Schistosoma mansoni genes by the EST strategy using a directional cDNA library. Gene. 1995 Jan 23; 152(2):141-7. PMID: 7835692.
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    97. Tanaka M, Hirai H, LoVerde PT, Nagafuchi S, Franco GR, Simpson AJ, Pena SD. Yeast artificial chromosome (YAC)-based genome mapping of Schistosoma mansoni. Mol Biochem Parasitol. 1995 Jan; 69(1):41-51. PMID: 7723787.
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    98. Vallejo GA, Macedo AM, Chiari E, Pena SD. Kinetoplast DNA from Trypanosoma rangeli contains two distinct classes of minicircles with different size and molecular organization. Mol Biochem Parasitol. 1994 Oct; 67(2):245-53. PMID: 7870129.
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    99. Pena SD, Chakraborty R. Paternity testing in the DNA era. Trends Genet. 1994 Jun; 10(6):204-9. PMID: 8073534.
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    100. Pena SD, Barreto G, Vago AR, De Marco L, Reinach FC, Dias Neto E, Simpson AJ. Sequence-specific "gene signatures" can be obtained by PCR with single specific primers at low stringency. Proc Natl Acad Sci U S A. 1994 Mar 01; 91(5):1946-9. PMID: 8127912.
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    101. Pena SD, de Souza KT, de Andrade M, Chakraborty R. Allelic associations of two polymorphic microsatellites in intron 40 of the human von Willebrand factor gene. Proc Natl Acad Sci U S A. 1994 Jan 18; 91(2):723-7. PMID: 8290589.
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    102. Haddad LA, Pena SD. CAT repeat polymorphism in a human expressed sequence tag (EST00444) (D13S308). Hum Mol Genet. 1993 Oct; 2(10):1748. PMID: 8268943.
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    103. Vallejo GA, Chiari E, Macedo AM, Pena SD. A simple laboratory method for distinguishing between Trypanosoma cruzi and Trypanosoma rangeli. Trans R Soc Trop Med Hyg. 1993 Mar-Apr; 87(2):165-6. PMID: 8101668.
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    104. Dias Neto E, Santos FR, Pena SD, Simpson AJ. Sex determination by low stringency PCR (LS-PCR). Nucleic Acids Res. 1993 Feb 11; 21(3):763-4. PMID: 8441697.
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    105. Santos FR, Pena SD, Epplen JT. Genetic and population study of a Y-linked tetranucleotide repeat DNA polymorphism with a simple non-isotopic technique. Hum Genet. 1993 Feb; 90(6):655-6. PMID: 8444472.
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    106. Dias Neto E, Steindel M, Passos LK, de Souza CP, Rollinson D, Katz N, Romanha AJ, Pena SD, Simpson AJ. The use of RAPDs for the study of the genetic diversity of Schistosoma mansoni and Trypanosoma cruzi. EXS. 1993; 67:339-45. PMID: 8400704.
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    107. Macedo AM, Vallejo GA, Chiari E, Pena SD. DNA fingerprinting reveals relationships between strains of Trypanosoma rangeli and Trypanosoma cruzi. EXS. 1993; 67:321-9. PMID: 8400702.
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    108. Dias Neto E, de Souza CP, Rollinson D, Katz N, Pena SD, Simpson AJ. The random amplification of polymorphic DNA allows the identification of strains and species of schistosome. Mol Biochem Parasitol. 1993 Jan; 57(1):83-8. PMID: 8426617.
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    109. Simpson AJ, Dias Neto E, Steindel M, Caballero OL, Passos LK, Pena SD. The use of RAPDs for the analysis of parasites. EXS. 1993; 67:331-7. PMID: 8400703.
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    110. Pena SD, Santos PC, Campos MC, Macedo AM. Paternity testing with the F10 multilocus DNA fingerprinting probe. EXS. 1993; 67:237-47. PMID: 8400693.
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    111. Santos FR, Epplen JT, Pena SD. Testing deficiency paternity cases with a Y-linked tetranucleotide repeat polymorphism. EXS. 1993; 67:261-5. PMID: 8400696.
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    112. Macedo AM, Martins MS, Chiari E, Pena SD. DNA fingerprinting of Trypanosoma cruzi: a new tool for characterization of strains and clones. Mol Biochem Parasitol. 1992 Oct; 55(1-2):147-53. PMID: 1435866.
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    113. Macedo AM, Melo MN, Gomes RF, Pena SD. DNA fingerprints: a tool for identification and determination of the relationships between species and strains of Leishmania. Mol Biochem Parasitol. 1992 Jul; 53(1-2):63-70. PMID: 1501645.
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    114. Guimarães EM, Brasileiro Filho G, Pena SD. Human papillomavirus detection in cervical dysplasias or neoplasias and in condylomata acuminata by in situ hybridization with biotinylated DNA probes. Rev Inst Med Trop Sao Paulo. 1992 Jul-Aug; 34(4):309-14. PMID: 1342087.
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    115. Brasileiro Filho G, Pena SD. Molecular biological techniques for the diagnosis of infectious diseases. Rev Soc Bras Med Trop. 1992 Jan-Mar; 25(1):59-71. PMID: 1308067.
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    116. Simpson AJ, Pena SD. Host-related DNA sequences in the schistosome genome? Parasitol Today. 1991 Oct; 7(10):266. PMID: 15463384.
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    117. Pena SD, Macedo AM, Gontijo NF, Medeiros AM, Ribeiro JC. DNA bioprints: simple nonisotopic DNA fingerprints with biotinylated probes. Electrophoresis. 1991 Feb-Mar; 12(2-3):146-52. PMID: 2040262.
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    118. Pena SD, Macedo AM, Braga VM, Rumjanek FD, Simpson AJ. F10, the gene for the glycine-rich major eggshell protein of Schistosoma mansoni recognizes a family of hypervariable minisatellites in the human genome. Nucleic Acids Res. 1990 Dec 25; 18(24):7466. PMID: 2259647.
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    119. Prado VF, Reis DD, Pena SD. Biochemical and immunochemical identification of the fetal polypeptides of human amniotic fluid during the second trimester of pregnancy. Braz J Med Biol Res. 1990; 23(2):121-31. PMID: 2207440.
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    120. Gontijo NF, Ribeiro JC, Pena SD. Direct hybridization of biotin-labeled probes in dried agarose gels. Trends Genet. 1990 Jan; 6(1):3. PMID: 2326889.
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    121. Medeiros AC, Macedo AM, Pena SD. M13 Bioprints: non-isotopic detection of individual-specific human DNA fingerprints with biotinylated M13 bacteriophage. Forensic Sci Int. 1989 Dec; 43(3):275-80. PMID: 2613141.
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    122. Macedo AM, Medeiros AC, Pena SD. A general method for efficient non-isotopic labeling of DNA probes cloned in M13 vectors: application to DNA fingerprinting. Nucleic Acids Res. 1989 Jun 12; 17(11):4414. PMID: 2740245.
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    123. Medeiros AC, Macedo AM, Pena SD. A simple non-isotopic method for DNA fingerprinting with M13 phage. Nucleic Acids Res. 1988 Nov 11; 16(21):10394. PMID: 3194226.
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