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Dr Kenneth Stuart

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. McDermott SM, Guo X, Carnes J, Stuart K. Differential Editosome Protein Function between Life Cycle Stages of Trypanosoma brucei. J Biol Chem. 2015 Oct 09; 290(41):24914-31. PMID: 26304125; PMCID: PMC4599000 [Available on 10/09/16].
    2. Phan IQ, Davies DR, Moretti NS, Shanmugam D, Cestari I, Anupama A, Fairman JW, Edwards TE, Stuart K, Schenkman S, Myler PJ. Iron superoxide dismutases in eukaryotic pathogens: new insights from Apicomplexa and Trypanosoma structures. Acta Crystallogr F Struct Biol Commun. 2015 May; 71(Pt 5):615-21. PMID: 25961325; PMCID: PMC4427173.
    3. Stuart K. Personal reflections on RNA: an emphasis on trypanosomes. RNA. 2015 Apr; 21(4):745-6. PMID: 25780218; PMCID: PMC4371360.
    4. Carnes J, Anupama A, Balmer O, Jackson A, Lewis M, Brown R, Cestari I, Desquesnes M, Gendrin C, Hertz-Fowler C, Imamura H, Ivens A, Korený L, Lai DH, MacLeod A, McDermott SM, Merritt C, Monnerat S, Moon W, Myler P, Phan I, Ramasamy G, Sivam D, Lun ZR, Lukeš J, Stuart K, Schnaufer A. Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty. PLoS Negl Trop Dis. 2015 Jan; 9(1):e3404. PMID: 25568942; PMCID: PMC4288722.
    5. Carnes J, Lerch M, Kurtz I, Stuart K. Bloodstream form Trypanosoma brucei do not require mRPN1 for gRNA processing. RNA. 2015 Jan; 21(1):28-35. PMID: 25404564; PMCID: PMC4274635.
    6. Merritt C, Silva LE, Tanner AL, Stuart K, Pollastri MP. Kinases as druggable targets in trypanosomatid protozoan parasites. Chem Rev. 2014 Nov 26; 114(22):11280-304. PMID: 26443079; PMCID: PMC4254031.
    7. Sekar A, Merritt C, Baugh L, Stuart K, Myler PJ. Tb927.10.6900 encodes the glucosyltransferase involved in synthesis of base J in Trypanosoma brucei. Mol Biochem Parasitol. 2014 Aug; 196(1):9-11. PMID: 25064607; PMCID: PMC4206709.
    8. Cestari I, Kalidas S, Monnerat S, Anupama A, Phillips MA, Stuart K. A multiple aminoacyl-tRNA synthetase complex that enhances tRNA-aminoacylation in African trypanosomes. Mol Cell Biol. 2013 Dec; 33(24):4872-88. PMID: 24126051; PMCID: PMC3889560.
    9. Merritt C, Stuart K. Identification of essential and non-essential protein kinases by a fusion PCR method for efficient production of transgenic Trypanosoma brucei. Mol Biochem Parasitol. 2013 Jul; 190(1):44-9. PMID: 23685343; PMCID: PMC3888357.
    10. Beck K, Acestor N, Schulfer A, Anupama A, Carnes J, Panigrahi AK, Stuart K. Trypanosoma brucei Tb927.2.6100 is an essential protein associated with kinetoplast DNA. Eukaryot Cell. 2013 Jul; 12(7):970-8. PMID: 23650088; PMCID: PMC3697465.
    11. Cestari I, Stuart K. Inhibition of isoleucyl-tRNA synthetase as a potential treatment for human African Trypanosomiasis. J Biol Chem. 2013 May 17; 288(20):14256-63. PMID: 23548908; PMCID: PMC3656282.
    12. Carnes J, Schnaufer A, McDermott SM, Domingo G, Proff R, Steinberg AG, Kurtz I, Stuart K. Mutational analysis of Trypanosoma brucei editosome proteins KREPB4 and KREPB5 reveals domains critical for function. RNA. 2012 Oct; 18(10):1897-909. PMID: 22919050; PMCID: PMC3446712.
    13. Lerch M, Carnes J, Acestor N, Guo X, Schnaufer A, Stuart K. Editosome accessory factors KREPB9 and KREPB10 in Trypanosoma brucei. Eukaryot Cell. 2012 Jul; 11(7):832-43. PMID: 22562468; PMCID: PMC3416509.
    14. Carnes J, Lewis Ernst N, Wickham C, Panicucci B, Stuart K. KREX2 is not essential for either procyclic or bloodstream form Trypanosoma brucei. PLoS One. 2012; 7(3):e33405. PMID: 22438925; PMCID: PMC3305318.
    15. Acestor N, Zíková A, Dalley RA, Anupama A, Panigrahi AK, Stuart KD. Trypanosoma brucei mitochondrial respiratome: composition and organization in procyclic form. Mol Cell Proteomics. 2011 Sep; 10(9):M110.006908. PMID: 21610103; PMCID: PMC3186196.
    16. Carnes J, Soares CZ, Wickham C, Stuart K. Endonuclease associations with three distinct editosomes in Trypanosoma brucei. J Biol Chem. 2011 Jun 03; 286(22):19320-30. PMID: 21474442; PMCID: PMC3103310.
    17. Parsons M, Myler PJ, Berriman M, Roos DS, Stuart KD. Identity crisis? The need for systematic gene IDs. Trends Parasitol. 2011 May; 27(5):183-4. PMID: 21474380; PMCID: PMC4337826.
    18. Guo X, Ernst NL, Carnes J, Stuart KD. The zinc-fingers of KREPA3 are essential for the complete editing of mitochondrial mRNAs in Trypanosoma brucei. PLoS One. 2010 Jan 27; 5(1):e8913. PMID: 20111718; PMCID: PMC2811742.
    19. Schnaufer A, Wu M, Park YJ, Nakai T, Deng J, Proff R, Hol WG, Stuart KD. A protein-protein interaction map of trypanosome ~20S editosomes. J Biol Chem. 2010 Feb 19; 285(8):5282-95. PMID: 20018860; PMCID: PMC2820757.
    20. Poliak P, Van Hoewyk D, Oborník M, Zíková A, Stuart KD, Tachezy J, Pilon M, Lukes J. Functions and cellular localization of cysteine desulfurase and selenocysteine lyase in Trypanosoma brucei. FEBS J. 2010 Jan; 277(2):383-93. PMID: 19968861; PMCID: PMC2813251.
    21. Acestor N, Panigrahi AK, Ogata Y, Anupama A, Stuart KD. Protein composition of Trypanosoma brucei mitochondrial membranes. Proteomics. 2009 Dec; 9(24):5497-508. PMID: 19834910; PMCID: PMC2842120.
    22. Zíková A, Schnaufer A, Dalley RA, Panigrahi AK, Stuart KD. The F(0)F(1)-ATP synthase complex contains novel subunits and is essential for procyclic Trypanosoma brucei. PLoS Pathog. 2009 May; 5(5):e1000436. PMID: 19436713; PMCID: PMC2674945.
    23. Ernst NL, Panicucci B, Carnes J, Stuart K. Differential functions of two editosome exoUases in Trypanosoma brucei. RNA. 2009 May; 15(5):947-57. PMID: 19318463; PMCID: PMC2673068.
    24. Panigrahi AK, Ogata Y, Zíková A, Anupama A, Dalley RA, Acestor N, Myler PJ, Stuart KD. A comprehensive analysis of Trypanosoma brucei mitochondrial proteome. Proteomics. 2009 Jan; 9(2):434-50. PMID: 19105172; PMCID: PMC2869593.
    25. Acestor N, Panigrahi AK, Carnes J, Zíková A, Stuart KD. The MRB1 complex functions in kinetoplastid RNA processing. RNA. 2009 Feb; 15(2):277-86. PMID: 19096045; PMCID: PMC2648719.
    26. Guo X, Ernst NL, Stuart KD. The KREPA3 zinc finger motifs and OB-fold domain are essential for RNA editing and survival of Trypanosoma brucei. Mol Cell Biol. 2008 Nov; 28(22):6939-53. PMID: 18794366; PMCID: PMC2573302.
    27. Zíková A, Panigrahi AK, Uboldi AD, Dalley RA, Handman E, Stuart K. Structural and functional association of Trypanosoma brucei MIX protein with cytochrome c oxidase complex. Eukaryot Cell. 2008 Nov; 7(11):1994-2003. PMID: 18776036; PMCID: PMC2583542.
    28. Stuart K, Brun R, Croft S, Fairlamb A, Gürtler RE, McKerrow J, Reed S, Tarleton R. Kinetoplastids: related protozoan pathogens, different diseases. J Clin Invest. 2008 Apr; 118(4):1301-10. PMID: 18382742; PMCID: PMC2276762.
    29. Hashimi H, Zíková A, Panigrahi AK, Stuart KD, Lukes J. TbRGG1, an essential protein involved in kinetoplastid RNA metabolism that is associated with a novel multiprotein complex. RNA. 2008 May; 14(5):970-80. PMID: 18369185; PMCID: PMC2327366.
    30. Zíková A, Panigrahi AK, Dalley RA, Acestor N, Anupama A, Ogata Y, Myler PJ, Stuart K. Trypanosoma brucei mitochondrial ribosomes: affinity purification and component identification by mass spectrometry. Mol Cell Proteomics. 2008 Jul; 7(7):1286-96. PMID: 18364347; PMCID: PMC2493383.
    31. Panigrahi AK, Zíková A, Dalley RA, Acestor N, Ogata Y, Anupama A, Myler PJ, Stuart KD. Mitochondrial complexes in Trypanosoma brucei: a novel complex and a unique oxidoreductase complex. Mol Cell Proteomics. 2008 Mar; 7(3):534-45. PMID: 18073385.
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    32. Tarun SZ, Schnaufer A, Ernst NL, Proff R, Deng J, Hol W, Stuart K. KREPA6 is an RNA-binding protein essential for editosome integrity and survival of Trypanosoma brucei. RNA. 2008 Feb; 14(2):347-58. PMID: 18065716; PMCID: PMC2212256.
    33. Carnes J, Trotter JR, Peltan A, Fleck M, Stuart K. RNA editing in Trypanosoma brucei requires three different editosomes. Mol Cell Biol. 2008 Jan; 28(1):122-30. PMID: 17954557; PMCID: PMC2223309.
    34. Babbarwal VK, Fleck M, Ernst NL, Schnaufer A, Stuart K. An essential role of KREPB4 in RNA editing and structural integrity of the editosome in Trypanosoma brucei. RNA. 2007 May; 13(5):737-44. PMID: 17369311; PMCID: PMC1852822.
    35. Carnes J, Stuart KD. Uridine insertion/deletion editing activities. Methods Enzymol. 2007; 424:25-54. PMID: 17662835.
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    36. Panigrahi AK, Schnaufer A, Stuart KD. Isolation and compositional analysis of trypanosomatid editosomes. Methods Enzymol. 2007; 424:3-24. PMID: 17662834.
      View in: PubMed
    37. Panigrahi AK, Ernst NL, Domingo GJ, Fleck M, Salavati R, Stuart KD. Compositionally and functionally distinct editosomes in Trypanosoma brucei. RNA. 2006 Jun; 12(6):1038-49. PMID: 16611942; PMCID: PMC1464856.
    38. Salavati R, Ernst NL, O'Rear J, Gilliam T, Tarun S, Stuart K. KREPA4, an RNA binding protein essential for editosome integrity and survival of Trypanosoma brucei. RNA. 2006 May; 12(5):819-31. PMID: 16601201; PMCID: PMC1440894.
    39. Trotter JR, Ernst NL, Carnes J, Panicucci B, Stuart K. A deletion site editing endonuclease in Trypanosoma brucei. Mol Cell. 2005 Nov 11; 20(3):403-12. PMID: 16285922.
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    40. Carnes J, Trotter JR, Ernst NL, Steinberg A, Stuart K. An essential RNase III insertion editing endonuclease in Trypanosoma brucei. Proc Natl Acad Sci U S A. 2005 Nov 15; 102(46):16614-9. PMID: 16269544; PMCID: PMC1283813.
    41. Ivens AC, Peacock CS, Worthey EA, Murphy L, Aggarwal G, Berriman M, Sisk E, Rajandream MA, Adlem E, Aert R, Anupama A, Apostolou Z, Attipoe P, Bason N, Bauser C, Beck A, Beverley SM, Bianchettin G, Borzym K, Bothe G, Bruschi CV, Collins M, Cadag E, Ciarloni L, Clayton C, Coulson RM, Cronin A, Cruz AK, Davies RM, De Gaudenzi J, Dobson DE, Duesterhoeft A, Fazelina G, Fosker N, Frasch AC, Fraser A, Fuchs M, Gabel C, Goble A, Goffeau A, Harris D, Hertz-Fowler C, Hilbert H, Horn D, Huang Y, Klages S, Knights A, Kube M, Larke N, Litvin L, Lord A, Louie T, Marra M, Masuy D, Matthews K, Michaeli S, Mottram JC, Müller-Auer S, Munden H, Nelson S, Norbertczak H, Oliver K, O'neil S, Pentony M, Pohl TM, Price C, Purnelle B, Quail MA, Rabbinowitsch E, Reinhardt R, Rieger M, Rinta J, Robben J, Robertson L, Ruiz JC, Rutter S, Saunders D, Schäfer M, Schein J, Schwartz DC, Seeger K, Seyler A, Sharp S, Shin H, Sivam D, Squares R, Squares S, Tosato V, Vogt C, Volckaert G, Wambutt R, Warren T, Wedler H, Woodward J, Zhou S, Zimmermann W, Smith DF, Blackwell JM, Stuart KD, Barrell B, Myler PJ. The genome of the kinetoplastid parasite, Leishmania major. Science. 2005 Jul 15; 309(5733):436-42. PMID: 16020728; PMCID: PMC1470643.
    42. El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, Wortman JR, Alsmark UC, Angiuoli S, Anupama A, Badger J, Bringaud F, Cadag E, Carlton JM, Cerqueira GC, Creasy T, Delcher AL, Djikeng A, Embley TM, Hauser C, Ivens AC, Kummerfeld SK, Pereira-Leal JB, Nilsson D, Peterson J, Salzberg SL, Shallom J, Silva JC, Sundaram J, Westenberger S, White O, Melville SE, Donelson JE, Andersson B, Stuart KD, Hall N. Comparative genomics of trypanosomatid parasitic protozoa. Science. 2005 Jul 15; 309(5733):404-9. PMID: 16020724.
      View in: PubMed
    43. El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, Ghedin E, Worthey EA, Delcher AL, Blandin G, Westenberger SJ, Caler E, Cerqueira GC, Branche C, Haas B, Anupama A, Arner E, Aslund L, Attipoe P, Bontempi E, Bringaud F, Burton P, Cadag E, Campbell DA, Carrington M, Crabtree J, Darban H, da Silveira JF, de Jong P, Edwards K, Englund PT, Fazelina G, Feldblyum T, Ferella M, Frasch AC, Gull K, Horn D, Hou L, Huang Y, Kindlund E, Klingbeil M, Kluge S, Koo H, Lacerda D, Levin MJ, Lorenzi H, Louie T, Machado CR, McCulloch R, McKenna A, Mizuno Y, Mottram JC, Nelson S, Ochaya S, Osoegawa K, Pai G, Parsons M, Pentony M, Pettersson U, Pop M, Ramirez JL, Rinta J, Robertson L, Salzberg SL, Sanchez DO, Seyler A, Sharma R, Shetty J, Simpson AJ, Sisk E, Tammi MT, Tarleton R, Teixeira S, Van Aken S, Vogt C, Ward PN, Wickstead B, Wortman J, White O, Fraser CM, Stuart KD, Andersson B. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science. 2005 Jul 15; 309(5733):409-15. PMID: 16020725.
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    44. Martínez-Calvillo S, Stuart K, Myler PJ. Ploidy changes associated with disruption of two adjacent genes on Leishmania major chromosome 1. Int J Parasitol. 2005 Apr 01; 35(4):419-29. PMID: 15777918.
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    45. Inoue M, Nakamura Y, Yasuda K, Yasaka N, Hara T, Schnaufer A, Stuart K, Fukuma T. The 14-3-3 proteins of Trypanosoma brucei function in motility, cytokinesis, and cell cycle. J Biol Chem. 2005 Apr 08; 280(14):14085-96. PMID: 15653691.
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    46. Zhou S, Kile A, Kvikstad E, Bechner M, Severin J, Forrest D, Runnheim R, Churas C, Anantharaman TS, Myler P, Vogt C, Ivens A, Stuart K, Schwartz DC. Shotgun optical mapping of the entire Leishmania major Friedlin genome. Mol Biochem Parasitol. 2004 Nov; 138(1):97-106. PMID: 15500921.
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    47. Sahin A, Lemercier G, Tetaud E, Espiau B, Myler P, Stuart K, Bakalara N, Merlin G. Trypanosomatid flagellum biogenesis: ARL-3A is involved in several species. Exp Parasitol. 2004 Nov-Dec; 108(3-4):126-33. PMID: 15582509.
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    48. Vondrusková E, van den Burg J, Zíková A, Ernst NL, Stuart K, Benne R, Lukes J. RNA interference analyses suggest a transcript-specific regulatory role for mitochondrial RNA-binding proteins MRP1 and MRP2 in RNA editing and other RNA processing in Trypanosoma brucei. J Biol Chem. 2005 Jan 28; 280(4):2429-38. PMID: 15504736.
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    49. Deng J, Schnaufer A, Salavati R, Stuart KD, Hol WG. High resolution crystal structure of a key editosome enzyme from Trypanosoma brucei: RNA editing ligase 1. J Mol Biol. 2004 Oct 22; 343(3):601-13. PMID: 15465048.
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    50. Martínez-Calvillo S, Nguyen D, Stuart K, Myler PJ. Transcription initiation and termination on Leishmania major chromosome 3. Eukaryot Cell. 2004 Apr; 3(2):506-17. PMID: 15075279; PMCID: PMC387636.
    51. Monnerat S, Martinez-Calvillo S, Worthey E, Myler PJ, Stuart KD, Fasel N. Genomic organization and gene expression in a chromosomal region of Leishmania major. Mol Biochem Parasitol. 2004 Apr; 134(2):233-43. PMID: 15003843.
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    52. Ghedin E, Bringaud F, Peterson J, Myler P, Berriman M, Ivens A, Andersson B, Bontempi E, Eisen J, Angiuoli S, Wanless D, Von Arx A, Murphy L, Lennard N, Salzberg S, Adams MD, White O, Hall N, Stuart K, Fraser CM, El-Sayed NM. Gene synteny and evolution of genome architecture in trypanosomatids. Mol Biochem Parasitol. 2004 Apr; 134(2):183-91. PMID: 15003838.
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    53. Stuart K, Salavati R, Igo RP, Lewis Ernst N, Palazzo SS, Wang B. In vitro assays for kinetoplastid U insertion-deletion editing and associated activities. Methods Mol Biol. 2004; 265:251-72. PMID: 15103078.
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    54. Stuart K, Panigrahi AK, Schnaufer A. Identification and characterization of trypanosome RNA-editing complex components. Methods Mol Biol. 2004; 265:273-91. PMID: 15103079.
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    55. Worthey EA, Schnaufer A, Mian IS, Stuart K, Salavati R. Comparative analysis of editosome proteins in trypanosomatids. Nucleic Acids Res. 2003 Nov 15; 31(22):6392-408. PMID: 14602897; PMCID: PMC275564.
    56. Belli SI, Monnerat S, Schaff C, Masina S, Noll T, Myler PJ, Stuart K, Fasel N. Sense and antisense transcripts in the histone H1 (HIS-1) locus of Leishmania major. Int J Parasitol. 2003 Aug; 33(9):965-75. PMID: 12906880.
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    57. Worthey EA, Martinez-Calvillo S, Schnaufer A, Aggarwal G, Cawthra J, Fazelinia G, Fong C, Fu G, Hassebrock M, Hixson G, Ivens AC, Kiser P, Marsolini F, Rickel E, Rickell E, Salavati R, Sisk E, Sunkin SM, Stuart KD, Myler PJ. Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene. Nucleic Acids Res. 2003 Jul 15; 31(14):4201-10. PMID: 12853638; PMCID: PMC167632.
    58. Panigrahi AK, Allen TE, Stuart K, Haynes PA, Gygi SP. Mass spectrometric analysis of the editosome and other multiprotein complexes in Trypanosoma brucei. J Am Soc Mass Spectrom. 2003 Jul; 14(7):728-35. PMID: 12837594.
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    59. Wang B, Ernst NL, Palazzo SS, Panigrahi AK, Salavati R, Stuart K. TbMP44 is essential for RNA editing and structural integrity of the editosome in Trypanosoma brucei. Eukaryot Cell. 2003 Jun; 2(3):578-87. PMID: 12796303; PMCID: PMC161458.
    60. Ernst NL, Panicucci B, Igo RP, Panigrahi AK, Salavati R, Stuart K. TbMP57 is a 3' terminal uridylyl transferase (TUTase) of the Trypanosoma brucei editosome. Mol Cell. 2003 Jun; 11(6):1525-36. PMID: 12820966.
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    61. Saxena A, Worthey EA, Yan S, Leland A, Stuart KD, Myler PJ. Evaluation of differential gene expression in Leishmania major Friedlin procyclics and metacyclics using DNA microarray analysis. Mol Biochem Parasitol. 2003 Jun; 129(1):103-14. PMID: 12798511.
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    62. Domingo GJ, Palazzo SS, Wang B, Pannicucci B, Salavati R, Stuart KD. Dyskinetoplastic Trypanosoma brucei contains functional editing complexes. Eukaryot Cell. 2003 Jun; 2(3):569-77. PMID: 12796302; PMCID: PMC161453.
    63. Martínez-Calvillo S, Yan S, Nguyen D, Fox M, Stuart K, Myler PJ. Transcription of Leishmania major Friedlin chromosome 1 initiates in both directions within a single region. Mol Cell. 2003 May; 11(5):1291-9. PMID: 12769852.
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    64. Panigrahi AK, Schnaufer A, Ernst NL, Wang B, Carmean N, Salavati R, Stuart K. Identification of novel components of Trypanosoma brucei editosomes. RNA. 2003 Apr; 9(4):484-92. PMID: 12649499; PMCID: PMC1370414.
    65. Villa H, Otero Marcos AR, Reguera RM, Balaña-Fouce R, García-Estrada C, Pérez-Pertejo Y, Tekwani BL, Myler PJ, Stuart KD, Bjornsti MA, Ordóñez D. A novel active DNA topoisomerase I in Leishmania donovani. J Biol Chem. 2003 Feb 07; 278(6):3521-6. PMID: 12444094.
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    66. Dubessay P, Ravel C, Bastien P, Stuart K, Dedet JP, Blaineau C, Pagès M. Mitotic stability of a coding DNA sequence-free version of Leishmania major chromosome 1 generated by targeted chromosome fragmentation. Gene. 2002 May 01; 289(1-2):151-9. PMID: 12036593.
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    67. Drozdz M, Palazzo SS, Salavati R, O'Rear J, Clayton C, Stuart K. TbMP81 is required for RNA editing in Trypanosoma brucei. EMBO J. 2002 Apr 02; 21(7):1791-9. PMID: 11927563; PMCID: PMC125959.
    68. Igo RP, Lawson SD, Stuart K. RNA sequence and base pairing effects on insertion editing in Trypanosoma brucei. Mol Cell Biol. 2002 Mar; 22(5):1567-76. PMID: 11839822; PMCID: PMC134691.
    69. Salavati R, Panigrahi AK, Morach BA, Palazzo SS, Igo RP, Stuart K. Endoribonuclease activities of Trypanosoma brucei mitochondria. Mol Biochem Parasitol. 2002 Mar; 120(1):23-31. PMID: 11849702.
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    70. Dole VS, Myler PJ, Stuart KD, Madhubala R. Expression of biopterin transporter (BT1) protein in Leishmania. FEMS Microbiol Lett. 2002 Feb 19; 208(1):89-91. PMID: 11934499.
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    71. Igo RP, Weston DS, Ernst NL, Panigrahi AK, Salavati R, Stuart K. Role of uridylate-specific exoribonuclease activity in Trypanosoma brucei RNA editing. Eukaryot Cell. 2002 Feb; 1(1):112-8. PMID: 12455977; PMCID: PMC118049.
    72. Yan S, Martinez-Calvillo S, Schnaufer A, Sunkin S, Myler PJ, Stuart K. A low-background inducible promoter system in Leishmania donovani. Mol Biochem Parasitol. 2002 Feb; 119(2):217-23. PMID: 11814573.
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    73. Stuart K, Panigrahi AK, Schnaufer A, Drozdz M, Clayton C, Salavati R. Composition of the editing complex of Trypanosoma brucei. Philos Trans R Soc Lond B Biol Sci. 2002 Jan 29; 357(1417):71-9. PMID: 11839184; PMCID: PMC1692915.
    74. Lawson SD, Igo RP, Salavati R, Stuart KD. The specificity of nucleotide removal during RNA editing in Trypanosoma brucei. RNA. 2001 Dec; 7(12):1793-802. PMID: 11780635; PMCID: PMC1370218.
    75. Myler PJ, Beverley SM, Cruz AK, Dobson DE, Ivens AC, McDonagh PD, Madhubala R, Martinez-Calvillo S, Ruiz JC, Saxena A, Sisk E, Sunkin SM, Worthey E, Yan S, Stuart KD. The Leishmania genome project: new insights into gene organization and function. Med Microbiol Immunol. 2001 Nov; 190(1-2):9-12. PMID: 11770120.
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    76. Panigrahi AK, Schnaufer A, Carmean N, Igo RP, Gygi SP, Ernst NL, Palazzo SS, Weston DS, Aebersold R, Salavati R, Stuart KD. Four related proteins of the Trypanosoma brucei RNA editing complex. Mol Cell Biol. 2001 Oct; 21(20):6833-40. PMID: 11564867; PMCID: PMC99860.
    77. Martínez-Calvillo S, Sunkin SM, Yan S, Fox M, Stuart K, Myler PJ. Genomic organization and functional characterization of the Leishmania major Friedlin ribosomal RNA gene locus. Mol Biochem Parasitol. 2001 Sep 03; 116(2):147-57. PMID: 11522348.
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    78. Salavati R, Panigrahi AK, Stuart KD. Mitochondrial ribonuclease P activity of Trypanosoma brucei. Mol Biochem Parasitol. 2001 Jun; 115(1):109-17. PMID: 11377745.
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    79. Sunkin SM, McDonagh P, Cunningham ML, Beverley SM, Stuart K, Myler PJ. Conservation of the LD1 region in Leishmania includes DNA implicated in LD1 amplification. Mol Biochem Parasitol. 2001 Apr 06; 113(2):315-21. PMID: 11295186.
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    80. Schnaufer A, Panigrahi AK, Panicucci B, Igo RP, Wirtz E, Salavati R, Stuart K. An RNA ligase essential for RNA editing and survival of the bloodstream form of Trypanosoma brucei. Science. 2001 Mar 16; 291(5511):2159-62. PMID: 11251122.
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    81. Yan S, Myler PJ, Stuart K. Tetracycline regulated gene expression in Leishmania donovani. Mol Biochem Parasitol. 2001 Jan 15; 112(1):61-9. PMID: 11166387.
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    82. Panigrahi AK, Gygi SP, Ernst NL, Igo RP, Palazzo SS, Schnaufer A, Weston DS, Carmean N, Salavati R, Aebersold R, Stuart KD. Association of two novel proteins, TbMP52 and TbMP48, with the Trypanosoma brucei RNA editing complex. Mol Cell Biol. 2001 Jan; 21(2):380-9. PMID: 11134327; PMCID: PMC86576.
    83. Burgess ML, Stuart K. Sequence bias in edited kinetoplastid RNAs. RNA. 2000 Nov; 6(11):1492-7. PMID: 11105749; PMCID: PMC1370019.
    84. Igo RP, Palazzo SS, Burgess ML, Panigrahi AK, Stuart K. Uridylate addition and RNA ligation contribute to the specificity of kinetoplastid insertion RNA editing. Mol Cell Biol. 2000 Nov; 20(22):8447-57. PMID: 11046141; PMCID: PMC102151.
    85. Dole VS, Raj VS, Ghosh A, Madhubala R, Myler PJ, Stuart KD. Immunization with recombinant LD1 antigens protects against experimental leishmaniasis. Vaccine. 2000 Oct 15; 19(4-5):423-30. PMID: 11027804.
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    86. Myler PJ, Sisk E, McDonagh PD, Martinez-Calvillo S, Schnaufer A, Sunkin SM, Yan S, Madhubala R, Ivens A, Stuart K. Genomic organization and gene function in Leishmania. Biochem Soc Trans. 2000 Oct; 28(5):527-31. PMID: 11044368.
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    87. Myler PJ, Stuart KD. Recent developments from the Leishmania genome project. Curr Opin Microbiol. 2000 Aug; 3(4):412-6. PMID: 10972503.
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    88. McDonagh PD, Myler PJ, Stuart K. The unusual gene organization of Leishmania major chromosome 1 may reflect novel transcription processes. Nucleic Acids Res. 2000 Jul 15; 28(14):2800-3. PMID: 10908338; PMCID: PMC102668.
    89. Sunkin SM, Kiser P, Myler PJ, Stuart K. The size difference between leishmania major friedlin chromosome one homologues is localized to sub-telomeric repeats at one chromosomal end. Mol Biochem Parasitol. 2000 Jun; 109(1):1-15. PMID: 10924752.
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    90. Chiurillo MA, Beck AE, Devos T, Myler PJ, Stuart K, Ramirez JL. Cloning and characterization of Leishmania donovani telomeres. Exp Parasitol. 2000 Apr; 94(4):248-58. PMID: 10831393.
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    91. Ghosh A, Madhubala R, Myler PJ, Stuart KD. Leishmania donovani: characterization and expression of ORFF, a gene amplified from the LDI locus. Exp Parasitol. 1999 Dec; 93(4):225-30. PMID: 10600448.
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    92. Jardim A, Bergeson SE, Shih S, Carter N, Lucas RW, Merlin G, Myler PJ, Stuart K, Ullman B. Xanthine phosphoribosyltransferase from Leishmania donovani. Molecular cloning, biochemical characterization, and genetic analysis. J Biol Chem. 1999 Nov 26; 274(48):34403-10. PMID: 10567419.
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    93. Lemley C, Yan S, Dole VS, Madhubala R, Cunningham ML, Beverley SM, Myler PJ, Stuart KD. The Leishmania donovani LD1 locus gene ORFG encodes a biopterin transporter (BT1). Mol Biochem Parasitol. 1999 Oct 25; 104(1):93-105. PMID: 10589984.
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    94. Yan S, Lodes MJ, Fox M, Myler PJ, Stuart K. Characterization of the Leishmania donovani ribosomal RNA promoter. Mol Biochem Parasitol. 1999 Oct 15; 103(2):197-210. PMID: 10551363.
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    95. Raj VS, Ghosh A, Dole VS, Madhubala R, Myler PJ, Stuart KD. Serodiagnosis of leishmaniasis with recombinant ORFF antigen. Am J Trop Med Hyg. 1999 Sep; 61(3):482-7. PMID: 10497995.
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    96. Burgess ML, Heidmann S, Stuart K. Kinetoplastid RNA editing does not require the terminal 3' hydroxyl of guide RNA, but modifications to the guide RNA terminus can inhibit in vitro U insertion. RNA. 1999 Jul; 5(7):883-92. PMID: 10411132; PMCID: PMC1369813.
    97. Myler PJ, Audleman L, deVos T, Hixson G, Kiser P, Lemley C, Magness C, Rickel E, Sisk E, Sunkin S, Swartzell S, Westlake T, Bastien P, Fu G, Ivens A, Stuart K. Leishmania major Friedlin chromosome 1 has an unusual distribution of protein-coding genes. Proc Natl Acad Sci U S A. 1999 Mar 16; 96(6):2902-6. PMID: 10077609; PMCID: PMC15867.
    98. Allen TE, Heidmann S, Reed R, Myler PJ, Göringer HU, Stuart KD. Association of guide RNA binding protein gBP21 with active RNA editing complexes in Trypanosoma brucei. Mol Cell Biol. 1998 Oct; 18(10):6014-22. PMID: 9742118; PMCID: PMC109187.
    99. Yokoyama K, Trobridge P, Buckner FS, Scholten J, Stuart KD, Van Voorhis WC, Gelb MH. The effects of protein farnesyltransferase inhibitors on trypanosomatids: inhibition of protein farnesylation and cell growth. Mol Biochem Parasitol. 1998 Jul 01; 94(1):87-97. PMID: 9719512.
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    100. Stuart K, Kable ML, Allen TE, Lawson S. Investigating the mechanism and machinery of RNA editing. Methods. 1998 May; 15(1):3-14. PMID: 9614648.
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    101. Yokoyama K, Lin Y, Stuart KD, Gelb MH. Prenylation of proteins in Trypanosoma brucei. Mol Biochem Parasitol. 1997 Jul; 87(1):61-9. PMID: 9233673.
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    102. Stuart K, Allen TE, Heidmann S, Seiwert SD. RNA editing in kinetoplastid protozoa. Microbiol Mol Biol Rev. 1997 Mar; 61(1):105-20. PMID: 9106367; PMCID: PMC232603.
    103. Köller J, Müller UF, Schmid B, Missel A, Kruft V, Stuart K, Göringer HU. Trypanosoma brucei gBP21. An arginine-rich mitochondrial protein that binds to guide RNA with high affinity. J Biol Chem. 1997 Feb 07; 272(6):3749-57. PMID: 9013632.
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    104. Koslowsky DJ, Kutas SM, Stuart K. Distinct differences in the requirements for ribonucleoprotein complex formation on differentially regulated pre-edited mRNAs in Trypanosoma brucei. Mol Biochem Parasitol. 1996 Sep; 80(1):1-14. PMID: 8885218.
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    105. Corell RA, Read LK, Riley GR, Nellissery JK, Allen TE, Kable ML, Wachal MD, Seiwert SD, Myler PJ, Stuart KD. Complexes from Trypanosoma brucei that exhibit deletion editing and other editing-associated properties. Mol Cell Biol. 1996 Apr; 16(4):1410-8. PMID: 8657114; PMCID: PMC231125.
    106. Seiwert SD, Heidmann S, Stuart K. Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing. Cell. 1996 Mar 22; 84(6):831-41. PMID: 8601307.
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    107. Lodes MJ, Merlin G, deVos T, Ghosh A, Madhubala R, Myler PJ, Stuart K. Increased expression of LD1 genes transcribed by RNA polymerase I in Leishmania donovani as a result of duplication into the rRNA gene locus. Mol Cell Biol. 1995 Dec; 15(12):6845-53. PMID: 8524251; PMCID: PMC230939.
    108. Zamora M, Sacks L, Stuart K. Intracellular localization of LRV1 in infected Leishmania cells and epitope conservation of the coat protein. J Eukaryot Microbiol. 1995 Sep-Oct; 42(5):580-2. PMID: 7581331.
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    109. Bastian LS, Lodes MJ, Myler PJ, Stuart K. Long-range restriction mapping of megabase-sized chromosomes that may be homologs in Trypanosoma brucei. J Eukaryot Microbiol. 1995 May-Jun; 42(3):278-82. PMID: 7496386.
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    110. Riley GR, Myler PJ, Stuart K. Quantitation of RNA editing substrates, products and potential intermediates: implications for developmental regulation. Nucleic Acids Res. 1995 Feb 25; 23(4):708-12. PMID: 7534910; PMCID: PMC306742.
    111. Myler PJ, Venkataraman GM, Lodes MJ, Stuart KD. A frequently amplified region in Leishmania contains a gene conserved in prokaryotes and eukaryotes. Gene. 1994 Oct 21; 148(2):187-93. PMID: 7958944.
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    112. Seiwert SD, Stuart K. RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro. Science. 1994 Oct 07; 266(5182):114-7. PMID: 7524149.
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    113. Myler PJ, Lodes MJ, Merlin G, de Vos T, Stuart KD. An amplified DNA element in Leishmania encodes potential integral membrane and nucleotide-binding proteins. Mol Biochem Parasitol. 1994 Jul; 66(1):11-20. PMID: 7984172.
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    114. Read LK, Wilson KD, Myler PJ, Stuart K. Editing of Trypanosoma brucei maxicircle CR5 mRNA generates variable carboxy terminal predicted protein sequences. Nucleic Acids Res. 1994 Apr 25; 22(8):1489-95. PMID: 7514788; PMCID: PMC308010.
    115. Read LK, Göringer HU, Stuart K. Assembly of mitochondrial ribonucleoprotein complexes involves specific guide RNA (gRNA)-binding proteins and gRNA domains but does not require preedited mRNA. Mol Cell Biol. 1994 Apr; 14(4):2629-39. PMID: 8139563; PMCID: PMC358630.
    116. Corell RA, Myler P, Stuart K. Trypanosoma brucei mitochondrial CR4 gene encodes an extensively edited mRNA with completely edited sequence only in bloodstream forms. Mol Biochem Parasitol. 1994 Mar; 64(1):65-74. PMID: 8078524.
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    117. Göringer HU, Koslowsky DJ, Morales TH, Stuart K. The formation of mitochondrial ribonucleoprotein complexes involving guide RNA molecules in Trypanosoma brucei. Proc Natl Acad Sci U S A. 1994 Mar 01; 91(5):1776-80. PMID: 8127880; PMCID: PMC43246.
    118. Aline RF, Myler PJ, Gobright E, Stuart KD. Early expression of a Trypanosoma brucei VSG gene duplicated from an incomplete basic copy. J Eukaryot Microbiol. 1994 Jan-Feb; 41(1):71-8. PMID: 8124269.
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    119. Souza AE, Myler PJ, Stuart KD. The alkane-inducible Candida maltosa ALI1 gene product is an NADH:ubiquinone oxidoreductase subunit homologue. Gene. 1993 Dec 31; 137(2):349-50. PMID: 8299970.
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    120. Tripp CA, Myler PJ, Stuart KD. Nucleotide sequence of a minicircle from Leishmania infantum. Mol Biochem Parasitol. 1993 Dec; 62(2):319-20. PMID: 8139625.
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    121. Souza AE, Shu HH, Read LK, Myler PJ, Stuart KD. Extensive editing of CR2 maxicircle transcripts of Trypanosoma brucei predicts a protein with homology to a subunit of NADH dehydrogenase. Mol Cell Biol. 1993 Nov; 13(11):6832-40. PMID: 8413276; PMCID: PMC364745.
    122. Myler PJ, Tripp CA, Thomas L, Venkataraman GM, Merlin G, Stuart KD. The LD1 amplified element from Leishmania infantum encodes a homolog of ribosomal protein L37. Mol Biochem Parasitol. 1993 Nov; 62(1):147-51. PMID: 8114820.
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    123. Lodes MJ, Smiley BL, Stadnyk AW, Bennett JL, Myler PJ, Stuart K. Expression of a retroposon-like sequence upstream of the putative Trypanosoma brucei variant surface glycoprotein gene expression site promoter. Mol Cell Biol. 1993 Nov; 13(11):7036-44. PMID: 8413293; PMCID: PMC364765.
    124. Corell RA, Feagin JE, Riley GR, Strickland T, Guderian JA, Myler PJ, Stuart K. Trypanosoma brucei minicircles encode multiple guide RNAs which can direct editing of extensively overlapping sequences. Nucleic Acids Res. 1993 Sep 11; 21(18):4313-20. PMID: 8414987; PMCID: PMC310066.
    125. Read LK, Fish WR, Muthiani AM, Stuart K. Maxicircle DNA and edited mRNA sequences of closely related trypanosome species: implications of kRNA editing for evolution of maxicircle genomes. Nucleic Acids Res. 1993 Aug 25; 21(17):4073-8. PMID: 8396763; PMCID: PMC310006.
    126. Read LK, Jacob AN, Fish WR, Muthiani AM, Stuart K. Sequences of three Trypanosoma congolense maxicircle genes allow prediction of regions encoding transcripts that undergo extensive RNA editing. Mol Biochem Parasitol. 1993 Aug; 60(2):337-41. PMID: 8232425.
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    127. Read LK, Stuart K. Conservation of gRNA gene cassette structure in African trypanosomes despite divergence in the defining flanking repeats. Mol Biochem Parasitol. 1993 Aug; 60(2):333-5. PMID: 8232424.
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    128. Myler PJ, Glick D, Feagin JE, Morales TH, Stuart KD. Structural organization of the maxicircle variable region of Trypanosoma brucei: identification of potential replication origins and topoisomerase II binding sites. Nucleic Acids Res. 1993 Feb 11; 21(3):687-94. PMID: 8382804; PMCID: PMC309170.
    129. Tripp CA, Wisdom WA, Myler PJ, Stuart KD. A multicopy, extrachromosomal DNA in Leishmania infantum contains two inverted repeats of the 27.5-kilobase LD1 sequence and encodes numerous transcripts. Mol Biochem Parasitol. 1992 Oct; 55(1-2):39-50. PMID: 1435875.
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    130. Stuart KD, Weeks R, Guilbride L, Myler PJ. Molecular organization of Leishmania RNA virus 1. Proc Natl Acad Sci U S A. 1992 Sep 15; 89(18):8596-600. PMID: 1382295; PMCID: PMC49967.
    131. Guilbride L, Myler PJ, Stuart K. Distribution and sequence divergence of LRV1 viruses among different Leishmania species. Mol Biochem Parasitol. 1992 Aug; 54(1):101-4. PMID: 1518522.
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    132. Souza AE, Myler PJ, Stuart K. Maxicircle CR1 transcripts of Trypanosoma brucei are edited and developmentally regulated and encode a putative iron-sulfur protein homologous to an NADH dehydrogenase subunit. Mol Cell Biol. 1992 May; 12(5):2100-7. PMID: 1373807; PMCID: PMC364381.
    133. Weeks R, Aline RF, Myler PJ, Stuart K. LRV1 viral particles in Leishmania guyanensis contain double-stranded or single-stranded RNA. J Virol. 1992 Mar; 66(3):1389-93. PMID: 1738198; PMCID: PMC240861.
    134. Read LK, Myler PJ, Stuart K. Extensive editing of both processed and preprocessed maxicircle CR6 transcripts in Trypanosoma brucei. J Biol Chem. 1992 Jan 15; 267(2):1123-8. PMID: 1730639.
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    135. Bhat GJ, Myler PJ, Stuart K. The two ATPase 6 mRNAs of Leishmania tarentolae differ at their 3' ends. Mol Biochem Parasitol. 1991 Oct; 48(2):139-49. PMID: 1837067.
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    136. Tripp CA, Myler PJ, Stuart K. A DNA sequence (LD1) which occurs in several genomic organizations in Leishmania. Mol Biochem Parasitol. 1991 Aug; 47(2):151-6. PMID: 1682806.
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    137. Bhat GJ, Lodes MJ, Myler PJ, Stuart KD. A simple method for cloning blunt ended DNA fragments. Nucleic Acids Res. 1991 Jan 25; 19(2):398. PMID: 1849632; PMCID: PMC333611.
    138. Smiley BL, Stadnyk AW, Myler PJ, Stuart K. The trypanosome leucine repeat gene in the variant surface glycoprotein expression site encodes a putative metal-binding domain and a region resembling protein-binding domains of yeast, Drosophila, and mammalian proteins. Mol Cell Biol. 1990 Dec; 10(12):6436-44. PMID: 2247064; PMCID: PMC362920.
    139. Smiley BL, Aline RF, Myler PJ, Stuart K. A retroposon in the 5' flank of a Trypanosoma brucei VSG gene lacks insertional terminal repeats. Mol Biochem Parasitol. 1990 Aug; 42(1):143-51. PMID: 2172817.
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    140. Stuart K, Feagin JE, Abraham JM. RNA editing: the creation of nucleotide sequences in mRNA--a minireview. Gene. 1989 Oct 15; 82(1):155-60. PMID: 2684771.
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    141. Scholler JK, Myler PJ, Stuart KD. A novel telomeric gene conversion in Trypanosoma brucei. Mol Biochem Parasitol. 1989 Jun 01; 35(1):11-9. PMID: 2761571.
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    142. Aline RF, Stuart K. Trypanosoma brucei: conserved sequence organization 3' to telomeric variant surface glycoprotein genes. Exp Parasitol. 1989 Jan; 68(1):57-66. PMID: 2645163.
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    143. Aline RF, Myler PJ, Stuart KD. Trypanosoma brucei: frequent loss of a telomeric variant surface glycoprotein gene. Exp Parasitol. 1989 Jan; 68(1):8-16. PMID: 2917631.
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    144. Myler PJ, Aline RF, Scholler JK, Stuart KD. Changes in telomere length associated with antigenic variation in Trypanosoma brucei. Mol Biochem Parasitol. 1988 Jun; 29(2-3):243-50. PMID: 2842675.
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    145. Myler PJ, Aline RF, Scholler JK, Stuart KD. Multiple events associated with antigenic switching in Trypanosoma brucei. Mol Biochem Parasitol. 1988 Jun; 29(2-3):227-41. PMID: 2842674.
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    146. Feagin JE, Stuart K. Developmental aspects of uridine addition within mitochondrial transcripts of Trypanosoma brucei. Mol Cell Biol. 1988 Mar; 8(3):1259-65. PMID: 2452974; PMCID: PMC363271.
    147. Feagin JE, Shaw JM, Simpson L, Stuart K. Creation of AUG initiation codons by addition of uridines within cytochrome b transcripts of kinetoplastids. Proc Natl Acad Sci U S A. 1988 Jan; 85(2):539-43. PMID: 2448777; PMCID: PMC279586.
    148. Scholler JK, Reed SG, Stuart K. Molecular karyotype of species and subspecies of Leishmania. Mol Biochem Parasitol. 1986 Sep; 20(3):279-93. PMID: 3762594.
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    149. Aline R, MacDonald G, Brown E, Allison J, Myler P, Rothwell V, Stuart K. (TAA)n within sequences flanking several intrachromosomal variant surface glycoprotein genes in Trypanosoma brucei. Nucleic Acids Res. 1985 May 10; 13(9):3161-77. PMID: 2987874; PMCID: PMC341227.
    150. Myler PJ, Allen AL, Agabian N, Stuart K. Antigenic variation in clones of Trypanosoma brucei grown in immune-deficient mice. Infect Immun. 1985 Mar; 47(3):684-90. PMID: 2579027; PMCID: PMC261358.
    151. Allison J, Rothwell V, Newport G, Agabian N, Stuart K. The IsTat 1.3 VSG multigene family in Trypanosoma brucei: retention of the expression linked copy through multiple antigenic switches. Nucleic Acids Res. 1984 Dec 11; 12(23):9051-66. PMID: 6083548; PMCID: PMC320437.
    152. Myler PJ, Allison J, Agabian N, Stuart K. Antigenic variation in African trypanosomes by gene replacement or activation of alternate telomeres. Cell. 1984 Nov; 39(1):203-11. PMID: 6091912.
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    153. Myler P, Nelson RG, Agabian N, Stuart K. Two mechanisms of expression of a predominant variant antigen gene of Trypanosoma brucei. Nature. 1984 May 17-23; 309(5965):282-4. PMID: 6325951.
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