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Professor Daniella Bartholomeu

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Reis-Cunha JL, Baptista RP, Rodrigues-Luiz GF, Coqueiro-Dos-Santos A, Valdivia HO, de Almeida LV, Cardoso MS, D'Ávila DA, Dias FHC, Fujiwara RT, Galvão LMC, Chiari E, Cerqueira GC, Bartholomeu DC. Whole genome sequencing of Trypanosoma cruzi field isolates reveals extensive genomic variability and complex aneuploidy patterns within TcII DTU. BMC Genomics. 2018 Nov 13; 19(1):816. PMID: 30424726.
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    2. Valdivia HO, Scholte LL, Oliveira G, Gabaldón T, Bartholomeu DC. The Leishmania metaphylome: a comprehensive survey of Leishmania protein phylogenetic relationships. BMC Genomics. 2015 Oct 30; 16:887. PMID: 26518129.
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    3. Valdivia HO, Reis-Cunha JL, Rodrigues-Luiz GF, Baptista RP, Baldeviano GC, Gerbasi RV, Dobson DE, Pratlong F, Bastien P, Lescano AG, Beverley SM, Bartholomeu DC. Comparative genomic analysis of Leishmania (Viannia) peruviana and Leishmania (Viannia) braziliensis. BMC Genomics. 2015 Sep 18; 16:715. PMID: 26384787.
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    4. Reis-Cunha JL, Rodrigues-Luiz GF, Valdivia HO, Baptista RP, Mendes TA, de Morais GL, Guedes R, Macedo AM, Bern C, Gilman RH, Lopez CT, Andersson B, Vasconcelos AT, Bartholomeu DC. Chromosomal copy number variation reveals differential levels of genomic plasticity in distinct Trypanosoma cruzi strains. BMC Genomics. 2015 Jul 04; 16:499. PMID: 26141959.
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    5. Ferreira SR, Mendes TA, Bueno LL, de Araújo JV, Bartholomeu DC, Fujiwara RT. A new methodology for evaluation of nematode viability. Biomed Res Int. 2015; 2015:879263. PMID: 25866820.
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    6. Toledo-Machado CM, Bueno LL, Menezes-Souza D, Machado-de-Avila RA, Nguyen C, Granier C, Bartholomeu DC, Chávez-Olórtegui C, Fujiwara RT. Use of Phage Display technology in development of canine visceral leishmaniasis vaccine using synthetic peptide trapped in sphingomyelin/cholesterol liposomes. Parasit Vectors. 2015 Feb 28; 8:133. PMID: 25889286.
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    7. Lopes Rda S, Moraes WJ, Rodrigues Tde S, Bartholomeu DC. ProGeRF: proteome and genome repeat finder utilizing a fast parallel hash function. Biomed Res Int. 2015; 2015:394157. PMID: 25811026.
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    8. Hojo-Souza NS, Pereira DB, Passos LS, Gazzinelli-Guimarães PH, Cardoso MS, Tada MS, Zanini GM, Bartholomeu DC, Fujiwara RT, Bueno LL. Phenotypic profiling of CD8(+) T cells during Plasmodium vivax blood-stage infection. BMC Infect Dis. 2015 Jan 31; 15:35. PMID: 25636730.
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    9. Menezes-Souza D, Mendes TA, Gomes Mde S, Bartholomeu DC, Fujiwara RT. Improving serodiagnosis of human and canine leishmaniasis with recombinant Leishmania braziliensis cathepsin l-like protein and a synthetic peptide containing its linear B-cell epitope. PLoS Negl Trop Dis. 2015 Jan; 9(1):e3426. PMID: 25569432.
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    10. Hojo-Souza NS, Pereira DB, Mendes TA, Passos LS, Gazzinelli-Guimarães AC, Gazzinelli-Guimarães PH, Tada MS, Zanini GM, Bartholomeu DC, Fujiwara RT, Bueno LL. CD4+ T cells apoptosis in Plasmodium vivax infection is mediated by activation of both intrinsic and extrinsic pathways. Malar J. 2015 Jan 05; 14:5. PMID: 25559491.
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    11. Bartholomeu DC, de Paiva RM, Mendes TA, DaRocha WD, Teixeira SM. Unveiling the intracellular survival gene kit of trypanosomatid parasites. PLoS Pathog. 2014 Dec; 10(12):e1004399. PMID: 25474314.
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    12. Fiuza JA, Gannavaram S, Santiago Hda C, Selvapandiyan A, Souza DM, Passos LS, de Mendonça LZ, Lemos-Giunchetti Dda S, Ricci ND, Bartholomeu DC, Giunchetti RC, Bueno LL, Correa-Oliveira R, Nakhasi HL, Fujiwara RT. Vaccination using live attenuated Leishmania donovani centrin deleted parasites induces protection in dogs against Leishmania infantum. Vaccine. 2015 Jan 03; 33(2):280-8. PMID: 25475955.
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    13. Menezes-Souza D, de Oliveira Mendes TA, de Araújo Leão AC, de Souza Gomes M, Fujiwara RT, Bartholomeu DC. Linear B-cell epitope mapping of MAPK3 and MAPK4 from Leishmania braziliensis: implications for the serodiagnosis of human and canine leishmaniasis. Appl Microbiol Biotechnol. 2015 Feb; 99(3):1323-36. PMID: 25359475.
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    14. Stoco PH, Wagner G, Talavera-Lopez C, Gerber A, Zaha A, Thompson CE, Bartholomeu DC, Lückemeyer DD, Bahia D, Loreto E, Prestes EB, Lima FM, Rodrigues-Luiz G, Vallejo GA, Filho JF, Schenkman S, Monteiro KM, Tyler KM, de Almeida LG, Ortiz MF, Chiurillo MA, de Moraes MH, Cunha Ode L, Mendonça-Neto R, Silva R, Teixeira SM, Murta SM, Sincero TC, Mendes TA, Urmenyi TP, Silva VG, DaRocha WD, Andersson B, Romanha AJ, Steindel M, de Vasconcelos AT, Grisard EC. Genome of the avirulent human-infective trypanosome--Trypanosoma rangeli. PLoS Negl Trop Dis. 2014 Sep; 8(9):e3176. PMID: 25233456.
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    15. Reis-Cunha JL, Mendes TA, de Almeida Lourdes R, Ribeiro DR, Machado-de-Avila RA, de Oliveira Tavares M, Lemos DS, Câmara AC, Olórtegui CC, de Lana M, da Cunha Galvão LM, Fujiwara RT, Bartholomeu DC. Genome-wide screening and identification of new Trypanosoma cruzi antigens with potential application for chronic Chagas disease diagnosis. PLoS One. 2014; 9(9):e106304. PMID: 25225853.
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    16. Menezes-Souza D, Mendes TA, Nagem RA, Santos TT, Silva AL, Santoro MM, de Carvalho SF, Coelho EA, Bartholomeu DC, Fujiwara RT. Mapping B-cell epitopes for the peroxidoxin of Leishmania (Viannia) braziliensis and its potential for the clinical diagnosis of tegumentary and visceral leishmaniasis. PLoS One. 2014; 9(6):e99216. PMID: 24921246.
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    17. Menezes-Souza D, Mendes TA, Gomes Mde S, Reis-Cunha JL, Nagem RA, Carneiro CM, Coelho EA, Galvão LM, Fujiwara RT, Bartholomeu DC. Epitope mapping of the HSP83.1 protein of Leishmania braziliensis discloses novel targets for immunodiagnosis of tegumentary and visceral clinical forms of leishmaniasis. Clin Vaccine Immunol. 2014 Jul; 21(7):949-59. PMID: 24807053.
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    18. Fonseca AM, Faria AR, Rodrigues FT, Nagem RA, Magalhães RD, Cunha JL, Bartholomeu DC, de Andrade HM. Evaluation of three recombinant Leishmania infantum antigens in human and canine visceral leishmaniasis diagnosis. Acta Trop. 2014 Sep; 137:25-30. PMID: 24801885.
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    19. Mendes TA, Reis Cunha JL, de Almeida Lourdes R, Rodrigues Luiz GF, Lemos LD, dos Santos AR, da Câmara AC, Galvão LM, Bern C, Gilman RH, Fujiwara RT, Gazzinelli RT, Bartholomeu DC. Identification of strain-specific B-cell epitopes in Trypanosoma cruzi using genome-scale epitope prediction and high-throughput immunoscreening with peptide arrays. PLoS Negl Trop Dis. 2013; 7(10):e2524. PMID: 24205430.
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    20. Gazzinelli-Guimarães PH, Gazzinelli-Guimarães AC, Silva FN, Mati VL, Dhom-Lemos Lde C, Barbosa FS, Passos LS, Gaze S, Carneiro CM, Bartholomeu DC, Bueno LL, Fujiwara RT. Parasitological and immunological aspects of early Ascaris spp. infection in mice. Int J Parasitol. 2013 Aug; 43(9):697-706. PMID: 23665127.
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    21. Mendes EA, Mendes TA, dos Santos SL, Menezes-Souza D, Bartholomeu DC, Martins IV, Silva LM, Lima Wdos S. Expression of IL-4, IL-10 and IFN-? in the liver tissue of cattle that are naturally infected with Fasciola hepatica. Vet Parasitol. 2013 Jul 01; 195(1-2):177-82. PMID: 23648284.
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    22. Motta MC, Martins AC, de Souza SS, Catta-Preta CM, Silva R, Klein CC, de Almeida LG, de Lima Cunha O, Ciapina LP, Brocchi M, Colabardini AC, de Araujo Lima B, Machado CR, de Almeida Soares CM, Probst CM, de Menezes CB, Thompson CE, Bartholomeu DC, Gradia DF, Pavoni DP, Grisard EC, Fantinatti-Garboggini F, Marchini FK, Rodrigues-Luiz GF, Wagner G, Goldman GH, Fietto JL, Elias MC, Goldman MH, Sagot MF, Pereira M, Stoco PH, de Mendonça-Neto RP, Teixeira SM, Maciel TE, de Oliveira Mendes TA, Ürményi TP, de Souza W, Schenkman S, de Vasconcelos AT. Predicting the proteins of Angomonas deanei, Strigomonas culicis and their respective endosymbionts reveals new aspects of the trypanosomatidae family. PLoS One. 2013; 8(4):e60209. PMID: 23560078.
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    23. Fiuza JA, Santiago Hda C, Selvapandiyan A, Gannavaram S, Ricci ND, Bueno LL, Bartholomeu DC, Correa-Oliveira R, Nakhasi HL, Fujiwara RT. Induction of immunogenicity by live attenuated Leishmania donovani centrin deleted parasites in dogs. Vaccine. 2013 Apr 03; 31(14):1785-92. PMID: 23398933.
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    24. Kangussu-Marcolino MM, de Paiva RM, Araújo PR, de Mendonça-Neto RP, Lemos L, Bartholomeu DC, Mortara RA, daRocha WD, Teixeira SM. Distinct genomic organization, mRNA expression and cellular localization of members of two amastin sub-families present in Trypanosoma cruzi. BMC Microbiol. 2013 Jan 17; 13:10. PMID: 23327097.
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    25. Mendes TA, Lobo FP, Rodrigues TS, Rodrigues-Luiz GF, daRocha WD, Fujiwara RT, Teixeira SM, Bartholomeu DC. Repeat-enriched proteins are related to host cell invasion and immune evasion in parasitic protozoa. Mol Biol Evol. 2013 Apr; 30(4):951-63. PMID: 23303306.
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    26. Andrade WA, Souza Mdo C, Ramos-Martinez E, Nagpal K, Dutra MS, Melo MB, Bartholomeu DC, Ghosh S, Golenbock DT, Gazzinelli RT. Combined action of nucleic acid-sensing Toll-like receptors and TLR11/TLR12 heterodimers imparts resistance to Toxoplasma gondii in mice. Cell Host Microbe. 2013 Jan 16; 13(1):42-53. PMID: 23290966.
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    27. Gazzinelli-Guimarães PH, Souza-Fagundes EM, Cancado GG, Martins VG, Dhom-Lemos LC, Ricci ND, Fiuza JA, Bueno LL, Miranda RR, Guatimosim S, Gazzinelli A, Correa-Oliveira R, Bartholomeu DC, Fujiwara RT. Cell apoptosis induced by hookworm antigens: a strategy of immunomodulation. Front Biosci (Elite Ed). 2013 Jan 01; 5:662-75. PMID: 23277021.
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    28. dos Santos SL, Freitas LM, Lobo FP, Rodrigues-Luiz GF, Mendes TA, Oliveira AC, Andrade LO, Chiari E, Gazzinelli RT, Teixeira SM, Fujiwara RT, Bartholomeu DC. The MASP family of Trypanosoma cruzi: changes in gene expression and antigenic profile during the acute phase of experimental infection. PLoS Negl Trop Dis. 2012; 6(8):e1779. PMID: 22905275.
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    29. Moraes Barros RR, Marini MM, Antônio CR, Cortez DR, Miyake AM, Lima FM, Ruiz JC, Bartholomeu DC, Chiurillo MA, Ramirez JL, da Silveira JF. Anatomy and evolution of telomeric and subtelomeric regions in the human protozoan parasite Trypanosoma cruzi. BMC Genomics. 2012 Jun 08; 13:229. PMID: 22681854.
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    30. Grynberg P, Passos-Silva DG, Mourão Mde M, Hirata R, Macedo AM, Machado CR, Bartholomeu DC, Franco GR. Trypanosoma cruzi gene expression in response to gamma radiation. PLoS One. 2012; 7(1):e29596. PMID: 22247781.
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    31. Ricci ND, Fiúza JA, Bueno LL, Cançado GG, Gazzinelli-Guimarães PH, Martins VG, Matoso LF, de Miranda RR, Geiger SM, Correa-Oliveira R, Gazzinelli A, Bartholomeu DC, Fujiwara RT. Induction of CD4(+)CD25(+)FOXP3(+) regulatory T cells during human hookworm infection modulates antigen-mediated lymphocyte proliferation. PLoS Negl Trop Dis. 2011 Nov; 5(11):e1383. PMID: 22087344.
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    32. Freitas LM, dos Santos SL, Rodrigues-Luiz GF, Mendes TA, Rodrigues TS, Gazzinelli RT, Teixeira SM, Fujiwara RT, Bartholomeu DC. Genomic analyses, gene expression and antigenic profile of the trans-sialidase superfamily of Trypanosoma cruzi reveal an undetected level of complexity. PLoS One. 2011; 6(10):e25914. PMID: 22039427.
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    33. Sharma S, DeOliveira RB, Kalantari P, Parroche P, Goutagny N, Jiang Z, Chan J, Bartholomeu DC, Lauw F, Hall JP, Barber GN, Gazzinelli RT, Fitzgerald KA, Golenbock DT. Innate immune recognition of an AT-rich stem-loop DNA motif in the Plasmodium falciparum genome. Immunity. 2011 Aug 26; 35(2):194-207. PMID: 21820332.
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    34. Caetano BC, Carmo BB, Melo MB, Cerny A, dos Santos SL, Bartholomeu DC, Golenbock DT, Gazzinelli RT. Requirement of UNC93B1 reveals a critical role for TLR7 in host resistance to primary infection with Trypanosoma cruzi. J Immunol. 2011 Aug 15; 187(4):1903-11. PMID: 21753151.
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    35. Bueno LL, Lobo FP, Morais CG, Mourão LC, de Ávila RA, Soares IS, Fontes CJ, Lacerda MV, Chavez Olórtegui C, Bartholomeu DC, Fujiwara RT, Braga EM. Identification of a highly antigenic linear B cell epitope within Plasmodium vivax apical membrane antigen 1 (AMA-1). PLoS One. 2011; 6(6):e21289. PMID: 21713006.
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    36. Costa MM, Andrade HM, Bartholomeu DC, Freitas LM, Pires SF, Chapeaurouge AD, Perales J, Ferreira AT, Giusta MS, Melo MN, Gazzinelli RT. Analysis of Leishmania chagasi by 2-D difference gel electrophoresis (2-D DIGE) and immunoproteomic: identification of novel candidate antigens for diagnostic tests and vaccine. J Proteome Res. 2011 May 06; 10(5):2172-84. PMID: 21355625.
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    37. Cançado GG, Fiuza JA, de Paiva NC, Lemos Lde C, Ricci ND, Gazzinelli-Guimarães PH, Martins VG, Bartholomeu DC, Negrão-Corrêa DA, Carneiro CM, Fujiwara RT. Hookworm products ameliorate dextran sodium sulfate-induced colitis in BALB/c mice. Inflamm Bowel Dis. 2011 Nov; 17(11):2275-86. PMID: 21290484.
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    38. Araújo PR, Burle-Caldas GA, Silva-Pereira RA, Bartholomeu DC, Darocha WD, Teixeira SM. Development of a dual reporter system to identify regulatory cis-acting elements in untranslated regions of Trypanosoma cruzi mRNAs. Parasitol Int. 2011 Jun; 60(2):161-9. PMID: 21277385.
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    39. Martins C, Reis-Cunha JL, Silva MN, Pereira EG, Pappas GJ, Bartholomeu DC, Zingales B. Identification of genes encoding hypothetical proteins in open-reading frame expressed sequence tags from mammalian stages of Trypanosoma cruzi. Genet Mol Res. 2011; 10(3):1589-630. PMID: 21863554.
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    40. Junqueira C, Caetano B, Bartholomeu DC, Melo MB, Ropert C, Rodrigues MM, Gazzinelli RT. The endless race between Trypanosoma cruzi and host immunity: lessons for and beyond Chagas disease. Expert Rev Mol Med. 2010 Sep 15; 12:e29. PMID: 20840799.
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    41. Cuglovici DA, Bartholomeu DC, Reis-Cunha JL, Carvalho AU, Ribeiro MF. Epidemiologic aspects of an outbreak of Trypanosoma vivax in a dairy cattle herd in Minas Gerais state, Brazil. Vet Parasitol. 2010 May 11; 169(3-4):320-6. PMID: 20138431.
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    42. Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM. The genome of the blood fluke Schistosoma mansoni. Nature. 2009 Jul 16; 460(7253):352-8. PMID: 19606141.
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    43. Bartholomeu DC, Cerqueira GC, Leão AC, daRocha WD, Pais FS, Macedo C, Djikeng A, Teixeira SM, El-Sayed NM. Genomic organization and expression profile of the mucin-associated surface protein (masp) family of the human pathogen Trypanosoma cruzi. Nucleic Acids Res. 2009 Jun; 37(10):3407-17. PMID: 19336417.
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    44. Campos PC, Bartholomeu DC, DaRocha WD, Cerqueira GC, Teixeira SM. Sequences involved in mRNA processing in Trypanosoma cruzi. Int J Parasitol. 2008 Oct; 38(12):1383-9. PMID: 18700146.
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    45. Bartholomeu DC, Ropert C, Melo MB, Parroche P, Junqueira CF, Teixeira SM, Sirois C, Kasperkovitz P, Knetter CF, Lien E, Latz E, Golenbock DT, Gazzinelli RT. Recruitment and endo-lysosomal activation of TLR9 in dendritic cells infected with Trypanosoma cruzi. J Immunol. 2008 Jul 15; 181(2):1333-44. PMID: 18606688.
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    46. Pais FS, DaRocha WD, Almeida RM, Leclercq SY, Penido ML, Fragoso SP, Bartholomeu DC, Gazzinelli RT, Teixeira SM. Molecular characterization of ribonucleoproteic antigens containing repeated amino acid sequences from Trypanosoma cruzi. Microbes Infect. 2008 Jun; 10(7):716-25. PMID: 18538614.
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    47. Martins C, Baptista CS, Ienne S, Cerqueira GC, Bartholomeu DC, Zingales B. Genomic organization and transcription analysis of the 195-bp satellite DNA in Trypanosoma cruzi. Mol Biochem Parasitol. 2008 Jul; 160(1):60-4. PMID: 18440654.
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    48. Ramirez-Ortiz ZG, Specht CA, Wang JP, Lee CK, Bartholomeu DC, Gazzinelli RT, Levitz SM. Toll-like receptor 9-dependent immune activation by unmethylated CpG motifs in Aspergillus fumigatus DNA. Infect Immun. 2008 May; 76(5):2123-9. PMID: 18332208.
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    49. Valadares HM, Pimenta JR, de Freitas JM, Duffy T, Bartholomeu DC, Oliveira Rde P, Chiari E, Moreira Mda C, Filho GB, Schijman AG, Franco GR, Machado CR, Pena SD, Macedo AM. Genetic profiling of Trypanosoma cruzi directly in infected tissues using nested PCR of polymorphic microsatellites. Int J Parasitol. 2008 Jun; 38(7):839-50. PMID: 18154957.
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    50. Cerqueira GC, Bartholomeu DC, DaRocha WD, Hou L, Freitas-Silva DM, Machado CR, El-Sayed NM, Teixeira SM. Sequence diversity and evolution of multigene families in Trypanosoma cruzi. Mol Biochem Parasitol. 2008 Jan; 157(1):65-72. PMID: 18023889.
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    51. Parroche P, Lauw FN, Goutagny N, Latz E, Monks BG, Visintin A, Halmen KA, Lamphier M, Olivier M, Bartholomeu DC, Gazzinelli RT, Golenbock DT. Malaria hemozoin is immunologically inert but radically enhances innate responses by presenting malaria DNA to Toll-like receptor 9. Proc Natl Acad Sci U S A. 2007 Feb 06; 104(6):1919-24. PMID: 17261807.
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    52. Djikeng A, Raverdy S, Foster J, Bartholomeu D, Zhang Y, El-Sayed NM, Carlow C. Cofactor-independent phosphoglycerate mutase is an essential gene in procyclic form Trypanosoma brucei. Parasitol Res. 2007 Mar; 100(4):887-92. PMID: 17024352.
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    53. Bringaud F, Bartholomeu DC, Blandin G, Delcher A, Baltz T, El-Sayed NM, Ghedin E. The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion. Mol Biol Evol. 2006 Feb; 23(2):411-20. PMID: 16267142.
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    54. Bringaud F, Ghedin E, Blandin G, Bartholomeu DC, Caler E, Levin MJ, Baltz T, El-Sayed NM. Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements. Mol Biochem Parasitol. 2006 Feb; 145(2):158-70. PMID: 16257065.
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    55. da Silva RA, Bartholomeu DC, Teixeira SM. Control mechanisms of tubulin gene expression in Trypanosoma cruzi. Int J Parasitol. 2006 Jan; 36(1):87-96. PMID: 16233898.
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    56. Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, Bartholomeu DC, Lennard NJ, Caler E, Hamlin NE, Haas B, Böhme U, Hannick L, Aslett MA, Shallom J, Marcello L, Hou L, Wickstead B, Alsmark UC, Arrowsmith C, Atkin RJ, Barron AJ, Bringaud F, Brooks K, Carrington M, Cherevach I, Chillingworth TJ, Churcher C, Clark LN, Corton CH, Cronin A, Davies RM, Doggett J, Djikeng A, Feldblyum T, Field MC, Fraser A, Goodhead I, Hance Z, Harper D, Harris BR, Hauser H, Hostetler J, Ivens A, Jagels K, Johnson D, Johnson J, Jones K, Kerhornou AX, Koo H, Larke N, Landfear S, Larkin C, Leech V, Line A, Lord A, Macleod A, Mooney PJ, Moule S, Martin DM, Morgan GW, Mungall K, Norbertczak H, Ormond D, Pai G, Peacock CS, Peterson J, Quail MA, Rabbinowitsch E, Rajandream MA, Reitter C, Salzberg SL, Sanders M, Schobel S, Sharp S, Simmonds M, Simpson AJ, Tallon L, Turner CM, Tait A, Tivey AR, Van Aken S, Walker D, Wanless D, Wang S, White B, White O, Whitehead S, Woodward J, Wortman J, Adams MD, Embley TM, Gull K, Ullu E, Barry JD, Fairlamb AH, Opperdoes F, Barrell BG, Donelson JE, Hall N, Fraser CM, Melville SE, El-Sayed NM. The genome of the African trypanosome Trypanosoma brucei. Science. 2005 Jul 15; 309(5733):416-22. PMID: 16020726.
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    57. El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, Ghedin E, Worthey EA, Delcher AL, Blandin G, Westenberger SJ, Caler E, Cerqueira GC, Branche C, Haas B, Anupama A, Arner E, Aslund L, Attipoe P, Bontempi E, Bringaud F, Burton P, Cadag E, Campbell DA, Carrington M, Crabtree J, Darban H, da Silveira JF, de Jong P, Edwards K, Englund PT, Fazelina G, Feldblyum T, Ferella M, Frasch AC, Gull K, Horn D, Hou L, Huang Y, Kindlund E, Klingbeil M, Kluge S, Koo H, Lacerda D, Levin MJ, Lorenzi H, Louie T, Machado CR, McCulloch R, McKenna A, Mizuno Y, Mottram JC, Nelson S, Ochaya S, Osoegawa K, Pai G, Parsons M, Pentony M, Pettersson U, Pop M, Ramirez JL, Rinta J, Robertson L, Salzberg SL, Sanchez DO, Seyler A, Sharma R, Shetty J, Simpson AJ, Sisk E, Tammi MT, Tarleton R, Teixeira S, Van Aken S, Vogt C, Ward PN, Wickstead B, Wortman J, White O, Fraser CM, Stuart KD, Andersson B. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science. 2005 Jul 15; 309(5733):409-15. PMID: 16020725.
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    58. El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, Wortman JR, Alsmark UC, Angiuoli S, Anupama A, Badger J, Bringaud F, Cadag E, Carlton JM, Cerqueira GC, Creasy T, Delcher AL, Djikeng A, Embley TM, Hauser C, Ivens AC, Kummerfeld SK, Pereira-Leal JB, Nilsson D, Peterson J, Salzberg SL, Shallom J, Silva JC, Sundaram J, Westenberger S, White O, Melville SE, Donelson JE, Andersson B, Stuart KD, Hall N. Comparative genomics of trypanosomatid parasitic protozoa. Science. 2005 Jul 15; 309(5733):404-9. PMID: 16020724.
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    59. El-Sayed NM, Bartholomeu D, Ivens A, Johnston DA, LoVerde PT. Advances in schistosome genomics. Trends Parasitol. 2004 Apr; 20(4):154-7. PMID: 15099549.
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    60. Bartholomeu D, El-Sayed NM. Sequencing strategies for parasite genomes. Methods Mol Biol. 2004; 270:1-16. PMID: 15153620.
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    61. DaRocha WD, Silva RA, Bartholomeu DC, Pires SF, Freitas JM, Macedo AM, Vazquez MP, Levin MJ, Teixeira SM. Expression of exogenous genes in Trypanosoma cruzi: improving vectors and electroporation protocols. Parasitol Res. 2004 Jan; 92(2):113-20. PMID: 14634799.
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    62. El-Sayed NM, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S, Tweedie A, Biteau N, Khalak HG, Lin X, Mason T, Hannick L, Caler E, Blandin G, Bartholomeu D, Simpson AJ, Kaul S, Zhao H, Pai G, Van Aken S, Utterback T, Haas B, Koo HL, Umayam L, Suh B, Gerrard C, Leech V, Qi R, Zhou S, Schwartz D, Feldblyum T, Salzberg S, Tait A, Turner CM, Ullu E, White O, Melville S, Adams MD, Fraser CM, Donelson JE. The sequence and analysis of Trypanosoma brucei chromosome II. Nucleic Acids Res. 2003 Aug 15; 31(16):4856-63. PMID: 12907728.
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    63. Bartholomeu DC, Silva RA, Galvão LM, el-Sayed NM, Donelson JE, Teixeira SM. Trypanosoma cruzi: RNA structure and post-transcriptional control of tubulin gene expression. Exp Parasitol. 2002 Nov-Dec; 102(3-4):123-33. PMID: 12856307.
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    64. DaRocha WD, Bartholomeu DC, Macêdo CD, Horta MF, Cunha-Neto E, Donelson JE, Teixeira SM. Characterization of cDNA clones encoding ribonucleoprotein antigens expressed in Trypanosoma cruzi amastigotes. Parasitol Res. 2002 Apr; 88(4):292-300. PMID: 11999014.
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    65. Bartholomeu DC, Batista JA, Vainstein MH, Lima BD, de Sá MC. Molecular cloning and characterization of a gene encoding the 29-kDa proteasome subunit from Trypanosoma cruzi. Mol Genet Genomics. 2001 Aug; 265(6):986-92. PMID: 11523790.
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    66. Augusto-Pinto L, Bartholomeu DC, Teixeira SM, Pena SD, Machado CR. Molecular cloning and characterization of the DNA mismatch repair gene class 2 from the Trypanosoma cruzi. Gene. 2001 Jul 11; 272(1-2):323-33. PMID: 11470539.
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