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Dr Thomas Smith

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Pemberton-Ross P, Chitnis N, Pothin E, Smith TA. A stochastic model for the probability of malaria extinction by mass drug administration. Malar J. 2017 Sep 18; 16(1):376. PMID: 28923063.
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    2. Homan T, Maire N, Hiscox A, Di Pasquale A, Kiche I, Onoka K, Mweresa C, Mukabana WR, Ross A, Smith TA, Takken W. Spatially variable risk factors for malaria in a geographically heterogeneous landscape, western Kenya: an explorative study. Malar J. 2016 Jan 04; 15:1. PMID: 26729363.
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    3. Slater HC, Ross A, Ouédraogo AL, White LJ, Nguon C, Walker PG, Ngor P, Aguas R, Silal SP, Dondorp AM, La Barre P, Burton R, Sauerwein RW, Drakeley C, Smith TA, Bousema T, Ghani AC. Assessing the impact of next-generation rapid diagnostic tests on Plasmodium falciparum malaria elimination strategies. Nature. 2015 Dec 03; 528(7580):S94-101. PMID: 26633771.
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    4. Penny MA, Pemberton-Ross P, Smith TA. The time-course of protection of the RTS,S vaccine against malaria infections and clinical disease. Malar J. 2015 Nov 04; 14:437. PMID: 26537608.
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    5. Penny MA, Maire N, Bever CA, Pemberton-Ross P, Briët OJ, Smith DL, Gething PW, Smith TA. Distribution of malaria exposure in endemic countries in Africa considering country levels of effective treatment. Malar J. 2015 Oct 05; 14:384. PMID: 26437798.
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    6. Cameron E, Battle KE, Bhatt S, Weiss DJ, Bisanzio D, Mappin B, Dalrymple U, Hay SI, Smith DL, Griffin JT, Wenger EA, Eckhoff PA, Smith TA, Penny MA, Gething PW. Defining the relationship between infection prevalence and clinical incidence of Plasmodium falciparum malaria. Nat Commun. 2015 Sep 08; 6:8170. PMID: 26348689.
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    7. Bretscher MT, Maire N, Felger I, Owusu-Agyei S, Smith T. Asymptomatic Plasmodium falciparum infections may not be shortened by acquired immunity. Malar J. 2015 Aug 04; 14:294. PMID: 26238109.
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    8. Penny MA, Galactionova K, Tarantino M, Tanner M, Smith TA. The public health impact of malaria vaccine RTS,S in malaria endemic Africa: country-specific predictions using 18 month follow-up Phase III data and simulation models. BMC Med. 2015 Jul 29; 13:170. PMID: 26219380.
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    9. Pemberton-Ross P, Smith TA, Hodel EM, Kay K, Penny MA. Age-shifting in malaria incidence as a result of induced immunological deficit: a simulation study. Malar J. 2015 Jul 25; 14:287. PMID: 26206255.
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    10. Briët OJ, Huho BJ, Gimnig JE, Bayoh N, Seyoum A, Sikaala CH, Govella N, Diallo DA, Abdullah S, Smith TA, Killeen GF. Applications and limitations of Centers for Disease Control and Prevention miniature light traps for measuring biting densities of African malaria vector populations: a pooled-analysis of 13 comparisons with human landing catches. Malar J. 2015 Jun 18; 14:247. PMID: 26082036.
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    11. Bennett A, Yukich J, Miller JM, Vounatsou P, Hamainza B, Ingwe MM, Moonga HB, Kamuliwo M, Keating J, Smith TA, Steketee RW, Eisele TP. A methodological framework for the improved use of routine health system data to evaluate national malaria control programs: evidence from Zambia. Popul Health Metr. 2014; 12(1):30. PMID: 25435815.
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    12. Stuckey EM, Stevenson J, Galactionova K, Baidjoe AY, Bousema T, Odongo W, Kariuki S, Drakeley C, Smith TA, Cox J, Chitnis N. Modeling the cost effectiveness of malaria control interventions in the highlands of western Kenya. PLoS One. 2014; 9(10):e107700. PMID: 25290939.
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    13. Tchicaya ES, Nsanzabana C, Smith TA, Donzé J, de Hipsl ML, Tano Y, Müller P, Briët OJ, Utzinger J, Koudou BG. Micro-encapsulated pirimiphos-methyl shows high insecticidal efficacy and long residual activity against pyrethroid-resistant malaria vectors in central Côte d'Ivoire. Malar J. 2014 Aug 25; 13:332. PMID: 25152326.
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    14. Lutambi AM, Chitnis N, Briët OJ, Smith TA, Penny MA. Clustering of vector control interventions has important consequences for their effectiveness: a modelling study. PLoS One. 2014; 9(5):e97065. PMID: 24823656.
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    15. Rumisha SF, Smith TA, Masanja H, Abdulla S, Vounatsou P. Relationship between child survival and malaria transmission: an analysis of the malaria transmission intensity and mortality burden across Africa (MTIMBA) project data in Rufiji demographic surveillance system, Tanzania. Malar J. 2014 Mar 28; 13:124. PMID: 24679119.
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    16. Stuckey EM, Smith TA, Chitnis N. Estimating malaria transmission through mathematical models. Trends Parasitol. 2013 Oct; 29(10):477-82. PMID: 24001452.
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    17. Crowell V, Yukich JO, Briët OJ, Ross A, Smith TA. A novel approach for measuring the burden of uncomplicated Plasmodium falciparum malaria: application to data from Zambia. PLoS One. 2013; 8(2):e57297. PMID: 23468961.
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    18. Kasasa S, Asoala V, Gosoniu L, Anto F, Adjuik M, Tindana C, Smith T, Owusu-Agyei S, Vounatsou P. Spatio-temporal malaria transmission patterns in Navrongo demographic surveillance site, northern Ghana. Malar J. 2013 Feb 13; 12:63. PMID: 23405912.
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    19. Huho B, Briët O, Seyoum A, Sikaala C, Bayoh N, Gimnig J, Okumu F, Diallo D, Abdulla S, Smith T, Killeen G. Consistently high estimates for the proportion of human exposure to malaria vector populations occurring indoors in rural Africa. Int J Epidemiol. 2013 Feb; 42(1):235-47. PMID: 23396849.
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    20. Crowell V, Briët OJ, Hardy D, Chitnis N, Maire N, Di Pasquale A, Smith TA. Modelling the cost-effectiveness of mass screening and treatment for reducing Plasmodium falciparum malaria burden. Malar J. 2013 Jan 03; 12:4. PMID: 23286228.
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    21. Briët OJ, Smith TA, Chitnis N. Measurement of overall insecticidal effects in experimental hut trials. Parasit Vectors. 2012 Nov 13; 5:256. PMID: 23148718.
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    22. Stuckey EM, Stevenson JC, Cooke MK, Owaga C, Marube E, Oando G, Hardy D, Drakeley C, Smith TA, Cox J, Chitnis N. Simulation of malaria epidemiology and control in the highlands of Western Kenya. Malar J. 2012 Oct 29; 11:357. PMID: 23107070.
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    23. Chitnis N, Smith TA. Mathematical illiteracy impedes progress in biology. Proc Natl Acad Sci U S A. 2012 Nov 06; 109(45):E3055; author reply E3058-9. PMID: 22996332.
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    24. Felger I, Maire M, Bretscher MT, Falk N, Tiaden A, Sama W, Beck HP, Owusu-Agyei S, Smith TA. The dynamics of natural Plasmodium falciparum infections. PLoS One. 2012; 7(9):e45542. PMID: 23029082.
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    25. Brooks A, Smith TA, de Savigny D, Lengeler C. Implementing new health interventions in developing countries: why do we lose a decade or more? BMC Public Health. 2012 Aug 21; 12:683. PMID: 22908877.
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    26. Mueller I, Schoepflin S, Smith TA, Benton KL, Bretscher MT, Lin E, Kiniboro B, Zimmerman PA, Speed TP, Siba P, Felger I. Force of infection is key to understanding the epidemiology of Plasmodium falciparum malaria in Papua New Guinean children. Proc Natl Acad Sci U S A. 2012 Jun 19; 109(25):10030-5. PMID: 22665809.
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    27. Huho BJ, Killeen GF, Ferguson HM, Tami A, Lengeler C, Charlwood JD, Kihonda A, Kihonda J, Kachur SP, Smith TA, Abdulla SM. Artemisinin-based combination therapy does not measurably reduce human infectiousness to vectors in a setting of intense malaria transmission. Malar J. 2012 Apr 18; 11:118. PMID: 22513162.
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    28. Ferguson HM, Maire N, Takken W, Lyimo IN, Briët O, Lindsay SW, Smith TA. Selection of mosquito life-histories: a hidden weapon against malaria? Malar J. 2012 Apr 03; 11:106. PMID: 22471997.
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    29. Brooks A, Briët OJ, Hardy D, Steketee R, Smith TA. Simulated impact of RTS,S/AS01 vaccination programs in the context of changing malaria transmission. PLoS One. 2012; 7(3):e32587. PMID: 22412892.
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    30. Smith T, Ross A, Maire N, Chitnis N, Studer A, Hardy D, Brooks A, Penny M, Tanner M. Ensemble modeling of the likely public health impact of a pre-erythrocytic malaria vaccine. PLoS Med. 2012 Jan; 9(1):e1001157. PMID: 22272189.
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    31. Briët OJ, Hardy D, Smith TA. Importance of factors determining the effective lifetime of a mass, long-lasting, insecticidal net distribution: a sensitivity analysis. Malar J. 2012 Jan 13; 11:20. PMID: 22244509.
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    32. Koepfli C, Ross A, Kiniboro B, Smith TA, Zimmerman PA, Siba P, Mueller I, Felger I. Multiplicity and diversity of Plasmodium vivax infections in a highly endemic region in Papua New Guinea. PLoS Negl Trop Dis. 2011 Dec; 5(12):e1424. PMID: 22206027.
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    33. Pacheco GD, Christen A, Arnold B, Hattendorf J, Colford JM, Smith TA, Mäusezahl D. Reporting diarrhoea through a vernacular term in Quechua-speaking settings of rural Bolivia. J Health Popul Nutr. 2011 Dec; 29(6):552-9. PMID: 22283028.
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    34. Smith T, Schapira A. Reproduction numbers in malaria and their implications. Trends Parasitol. 2012 Jan; 28(1):3-8. PMID: 21996375.
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    35. Maire N, Shillcutt SD, Walker DG, Tediosi F, Smith TA. Cost-effectiveness of the introduction of a pre-erythrocytic malaria vaccine into the expanded program on immunization in sub-Saharan Africa: analysis of uncertainties using a stochastic individual-based simulation model of Plasmodium falciparum malaria. Value Health. 2011 Dec; 14(8):1028-38. PMID: 22152171.
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    36. Koepfli C, Schoepflin S, Bretscher M, Lin E, Kiniboro B, Zimmerman PA, Siba P, Smith TA, Mueller I, Felger I. How much remains undetected? Probability of molecular detection of human Plasmodia in the field. PLoS One. 2011 Apr 28; 6(4):e19010. PMID: 21552561.
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    37. Smith TA, Chitnis N, Briët OJ, Tanner M. Uses of mosquito-stage transmission-blocking vaccines against Plasmodium falciparum. Trends Parasitol. 2011 May; 27(5):190-6. PMID: 21277257.
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    38. Duthaler U, Smith TA, Keiser J. In vivo and in vitro sensitivity of Fasciola hepatica to triclabendazole combined with artesunate, artemether, or OZ78. Antimicrob Agents Chemother. 2010 Nov; 54(11):4596-604. PMID: 20733042.
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    39. Russell TL, Lwetoijera DW, Maliti D, Chipwaza B, Kihonda J, Charlwood JD, Smith TA, Lengeler C, Mwanyangala MA, Nathan R, Knols BG, Takken W, Killeen GF. Impact of promoting longer-lasting insecticide treatment of bed nets upon malaria transmission in a rural Tanzanian setting with pre-existing high coverage of untreated nets. Malar J. 2010 Jun 28; 9:187. PMID: 20579399.
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    40. Nsanzabana C, Hastings IM, Marfurt J, Müller I, Baea K, Rare L, Schapira A, Felger I, Betschart B, Smith TA, Beck HP, Genton B. Quantifying the evolution and impact of antimalarial drug resistance: drug use, spread of resistance, and drug failure over a 12-year period in Papua New Guinea. J Infect Dis. 2010 Feb 01; 201(3):435-43. PMID: 20047502.
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    41. Marfurt J, Smith TA, Hastings IM, Müller I, Sie A, Oa O, Baisor M, Reeder JC, Beck HP, Genton B. Plasmodium falciparum resistance to anti-malarial drugs in Papua New Guinea: evaluation of a community-based approach for the molecular monitoring of resistance. Malar J. 2010 Jan 07; 9:8. PMID: 20053293.
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    42. Mäusezahl D, Christen A, Pacheco GD, Tellez FA, Iriarte M, Zapata ME, Cevallos M, Hattendorf J, Cattaneo MD, Arnold B, Smith TA, Colford JM. Solar drinking water disinfection (SODIS) to reduce childhood diarrhoea in rural Bolivia: a cluster-randomized, controlled trial. PLoS Med. 2009 Aug; 6(8):e1000125. PMID: 19688036.
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    43. Müller I, Genton B, Rare L, Kiniboro B, Kastens W, Zimmerman P, Kazura J, Alpers M, Smith TA. Three different Plasmodium species show similar patterns of clinical tolerance of malaria infection. Malar J. 2009 Jul 14; 8:158. PMID: 19602275.
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    44. Keiser J, Xiao SH, Smith TA, Utzinger J. Combination chemotherapy against Clonorchis sinensis: experiments with artemether, artesunate, OZ78, praziquantel, and tribendimidine in a rat model. Antimicrob Agents Chemother. 2009 Sep; 53(9):3770-6. PMID: 19581454.
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    45. Tediosi F, Maire N, Penny M, Studer A, Smith TA. Simulation of the cost-effectiveness of malaria vaccines. Malar J. 2009 Jun 08; 8:127. PMID: 19505328.
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    46. Pluess B, Mueller I, Levi D, King G, Smith TA, Lengeler C. Malaria--a major health problem within an oil palm plantation around Popondetta, Papua New Guinea. Malar J. 2009 Apr 08; 8:56. PMID: 19356235.
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    47. Mueller I, Widmer S, Michel D, Maraga S, McNamara DT, Kiniboro B, Sie A, Smith TA, Zimmerman PA. High sensitivity detection of Plasmodium species reveals positive correlations between infections of different species, shifts in age distribution and reduced local variation in Papua New Guinea. Malar J. 2009 Mar 11; 8:41. PMID: 19284594.
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    48. Sogoba N, Vounatsou P, Bagayoko MM, Doumbia S, Dolo G, Gosoniu L, Traoré SF, Smith TA, Touré YT. Spatial distribution of the chromosomal forms of anopheles gambiae in Mali. Malar J. 2008 Oct 10; 7:205. PMID: 18847463.
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    49. Penny MA, Maire N, Studer A, Schapira A, Smith TA. What should vaccine developers ask? Simulation of the effectiveness of malaria vaccines. PLoS One. 2008 Sep 11; 3(9):e3193. PMID: 18784833.
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    50. Smith T, Maire N, Ross A, Penny M, Chitnis N, Schapira A, Studer A, Genton B, Lengeler C, Tediosi F, de Savigny D, Tanner M. Towards a comprehensive simulation model of malaria epidemiology and control. Parasitology. 2008 Nov; 135(13):1507-16. PMID: 18694530.
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    51. Hastings IM, Smith TA. MalHaploFreq: a computer programme for estimating malaria haplotype frequencies from blood samples. Malar J. 2008 Jul 15; 7:130. PMID: 18627599.
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    52. Marfurt J, Müller I, Sie A, Oa O, Reeder JC, Smith TA, Beck HP, Genton B. The usefulness of twenty-four molecular markers in predicting treatment outcome with combination therapy of amodiaquine plus sulphadoxine-pyrimethamine against falciparum malaria in Papua New Guinea. Malar J. 2008 Apr 19; 7:61. PMID: 18423045.
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    53. Smith TA. Estimation of heterogeneity in malaria transmission by stochastic modelling of apparent deviations from mass action kinetics. Malar J. 2008 Jan 11; 7:12. PMID: 18190717.
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    54. Killeen GF, Smith TA. Exploring the contributions of bed nets, cattle, insecticides and excitorepellency to malaria control: a deterministic model of mosquito host-seeking behaviour and mortality. Trans R Soc Trop Med Hyg. 2007 Sep; 101(9):867-80. PMID: 17631372.
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    55. Sogoba N, Vounatsou P, Doumbia S, Bagayoko M, Touré MB, Sissoko IM, Traore SF, Touré YT, Smith T. Spatial analysis of malaria transmission parameters in the rice cultivation area of Office du Niger, Mali. Am J Trop Med Hyg. 2007 Jun; 76(6):1009-15. PMID: 17556602.
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    56. Smith TA. Measures of clinical malaria in field trials of interventions against Plasmodium falciparum. Malar J. 2007 May 02; 6:53. PMID: 17475000.
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    57. Sogoba N, Doumbia S, Vounatsou P, Bagayoko MM, Dolo G, Traoré SF, Maïga HM, Touré YT, Smith T. Malaria transmission dynamics in Niono, Mali: the effect of the irrigation systems. Acta Trop. 2007 Mar; 101(3):232-40. PMID: 17362859.
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    58. Killeen GF, Kihonda J, Lyimo E, Oketch FR, Kotas ME, Mathenge E, Schellenberg JA, Lengeler C, Smith TA, Drakeley CJ. Quantifying behavioural interactions between humans and mosquitoes: evaluating the protective efficacy of insecticidal nets against malaria transmission in rural Tanzania. BMC Infect Dis. 2006 Nov 10; 6:161. PMID: 17096840.
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    59. Tediosi F, Hutton G, Maire N, Smith TA, Ross A, Tanner M. Predicting the cost-effectiveness of introducing a pre-erythrocytic malaria vaccine into the expanded program on immunization in Tanzania. Am J Trop Med Hyg. 2006 Aug; 75(2 Suppl):131-43. PMID: 16931824.
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    60. Wang SJ, Lengeler C, Smith TA, Vounatsou P, Akogbeto M, Tanner M. Rapid Urban Malaria Appraisal (RUMA) IV: epidemiology of urban malaria in Cotonou (Benin). Malar J. 2006 Jun 02; 5:45. PMID: 16749927.
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    61. Smith T. Commentary: malaria death rates remain highly pertinent. Int J Epidemiol. 2006 Jun; 35(3):704-5. PMID: 16672310.
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    62. Wang SJ, Lengeler C, Smith TA, Vounatsou P, Cissé G, Tanner M. Rapid Urban Malaria Appraisal (RUMA) III: epidemiology of urban malaria in the municipality of Yopougon (Abidjan). Malar J. 2006 Apr 04; 5:29. PMID: 16584573.
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    63. Wang SJ, Lengeler C, Smith TA, Vounatsou P, Diadie DA, Pritroipa X, Convelbo N, Kientga M, Tanner M. Rapid urban malaria appraisal (RUMA) I: epidemiology of urban malaria in Ouagadougou. Malar J. 2005 Sep 16; 4:43. PMID: 16168054.
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    64. Wang SJ, Lengeler C, Smith TA, Vounatsou P, Cissé G, Diallo DA, Akogbeto M, Mtasiwa D, Teklehaimanot A, Tanner M. Rapid urban malaria appraisal (RUMA) in sub-Saharan Africa. Malar J. 2005 Sep 09; 4:40. PMID: 16153298.
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    65. Mathenge EM, Misiani GO, Oulo DO, Irungu LW, Ndegwa PN, Smith TA, Killeen GF, Knols BG. Comparative performance of the Mbita trap, CDC light trap and the human landing catch in the sampling of Anopheles arabiensis, An. funestus and culicine species in a rice irrigation in western Kenya. Malar J. 2005 Jan 25; 4:7. PMID: 15667666.
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    66. Smith T, Dietz K, Vounatsou P, Muller I, English M, Marsh K. Bayesian age-stage modelling of Plasmodium falciparum sequestered parasite loads in severe malaria patients. Parasitology. 2004 Sep; 129(Pt 3):289-99. PMID: 15471004.
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    67. Smith T, Killeen G, Lengeler C, Tanner M. Relationships between the outcome of Plasmodium falciparum infection and the intensity of transmission in Africa. Am J Trop Med Hyg. 2004 Aug; 71(2 Suppl):80-6. PMID: 15331822.
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    68. Keiser J, Utzinger J, Caldas de Castro M, Smith TA, Tanner M, Singer BH. Urbanization in sub-saharan Africa and implication for malaria control. Am J Trop Med Hyg. 2004 Aug; 71(2 Suppl):118-27. PMID: 15331827.
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    69. Mathenge EM, Omweri GO, Irungu LW, Ndegwa PN, Walczak E, Smith TA, Killeen GF, Knols BG. Comparative field evaluation of the Mbita trap, the Centers for Disease Control light trap, and the human landing catch for sampling of malaria vectors in western Kenya. Am J Trop Med Hyg. 2004 Jan; 70(1):33-7. PMID: 14971695.
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    70. Genton B, Al-Yaman F, Betuela I, Anders RF, Saul A, Baea K, Mellombo M, Taraika J, Brown GV, Pye D, Irving DO, Felger I, Beck HP, Smith TA, Alpers MP. Safety and immunogenicity of a three-component blood-stage malaria vaccine (MSP1, MSP2, RESA) against Plasmodium falciparum in Papua New Guinean children. Vaccine. 2003 Dec 08; 22(1):30-41. PMID: 14604568.
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    71. Smith T, Vounatsou P. Estimation of infection and recovery rates for highly polymorphic parasites when detectability is imperfect, using hidden Markov models. Stat Med. 2003 May 30; 22(10):1709-24. PMID: 12720306.
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    72. Owusu-Agyei S, Binka F, Koram K, Anto F, Adjuik M, Nkrumah F, Smith T. Does radical cure of asymptomatic Plasmodium falciparum place adults in endemic areas at increased risk of recurrent symptomatic malaria? Trop Med Int Health. 2002 Jul; 7(7):599-603. PMID: 12100443.
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    73. Owusu-Agyei S, Smith T, Beck HP, Amenga-Etego L, Felger I. Molecular epidemiology of Plasmodium falciparum infections among asymptomatic inhabitants of a holoendemic malarious area in northern Ghana. Trop Med Int Health. 2002 May; 7(5):421-8. PMID: 12000651.
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    74. Genton B, Betuela I, Felger I, Al-Yaman F, Anders RF, Saul A, Rare L, Baisor M, Lorry K, Brown GV, Pye D, Irving DO, Smith TA, Beck HP, Alpers MP. A recombinant blood-stage malaria vaccine reduces Plasmodium falciparum density and exerts selective pressure on parasite populations in a phase 1-2b trial in Papua New Guinea. J Infect Dis. 2002 Mar 15; 185(6):820-7. PMID: 11920300.
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    75. Smith T, Genton B, Betuela I, Rare L, Alpers MP. Mosquito nets for the elderly? Trans R Soc Trop Med Hyg. 2002 Jan-Feb; 96(1):37-8. PMID: 11925987.
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    76. Smith TA, Leuenberger R, Lengeler C. Child mortality and malaria transmission intensity in Africa. Trends Parasitol. 2001 Mar; 17(3):145-9. PMID: 11286800.
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    77. Smith T, Felger I, Beck HP, Tanner M. Consequences of multiple infection with Plasmodium falciparum in an area of high endemicity. Parassitologia. 1999 Sep; 41(1-3):247-50. PMID: 10697863.
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